# GeneSpring v.6 # This is the annotations file for the Master Table of Genes (for both # ORFs and non-ORFs) for genome chlamy-v1.1. This file contains # annotations for the genes and genetic elements listed in the files # specified by the ORFs and nonORFs entries in your .genomedef file. Systematic Name name summary stern:f01 rpl20 chloroplast gene - - - - | - - - - - stern:f03 rpl14 chloroplast gene - - - - | - - - - - stern:f05 nad1 mitochondrial gene NC_001638 - - - | - - - - - stern:f07 nad4 mitochondrial gene NC_001638 - - - | - - - - - stern:f09 nad6 mitochondrial gene NC_001638 - - - | - - - - - stern:f11 cob mitochondrial gene NC_001638 - - - | - - - - - 1024119g03 DAL1 Allantoinase - - - - | - 2219.2 - - - 1024120h11 MCS IDS putative methylerythritol 2 4-cyclodiphosphate synthase - C_1340041 - - | - 5864 - 20021010.3010.1_go blastx SPTR:O15440 symbol:MRP5_HUMAN Multidrug resistance-[GO:0005524 ATP binding activity evidence=TAS] [GO:0008514 organic anion transporter activity evidence=TAS] [GO:0015239 multidrug transporter activity evidence=NR] [GO:0006832 small molecule transport evidence=TAS] [GO:0005624 membrane fraction evidence=TAS] [GO:0005887 integral to plasma membrane evidence=TAS] SPTR:O15440 symbol:MRP5_HUMAN Multidrug resistance-associated protein 5 55.8 1332 240 1.0e-71 684 [CH on 20030713 @ 443] 1030024e04 AMT3 putative ammonium transporter 3 - - - - | - (3192.1 7771.1) - - - 1030045h06 DEGP5 serine protease DegP family - C_20195 serine protease, trypsin family, DegP type - | - (5431.1 5431.2) - - - 1030056c08 NAR1 nitrite transporter, chloroplast - C_520040 - - | - 4551.1 - - - 1030062a08 - alkanesulfonate monooxygenase - - - - | - 4183.2 - - - 1112073b10 - - - - - - | - 5198.1 - - - 1112084f09 EZY1 zygote-specific gene - - - - | - 8051 - - - 1112094a12 AMT2 AF530051 ammonium transporter 2 - - - - | - 7266.1 - - - 1112094c03 - subtilisin-like protein - - - - | - 8780 - - - 1112110f08 - deubiquitinating enzyme - - - - | - 9164 - - - 1112111a12 DEGP4 serine protease DegP family - - - - | - 7199.1 - - - stern:h01 - glutamyl-tRNA reducatase AF305613 - - - | - - - - - stern:h03 PETF Ferredoxin L10349 - - - | - - - - - stern:h05 PSBQ OEE3 X13832 - - - | - - - - - stern:h07 ORF1995 chloroplast gene - - - - | - - - - - stern:h09 ORF2971B chloroplast gene - - - - | - - - - - stern:h11 rpoC1a chloroplast gene - - - - | - - - - - 1031007f10 CPY1 carboxypeptidase, serine-type (C_250148) - C_250148 carboxypeptidase, serine-type - | - - 7732 - - 1031011b10 CLPB3 Chaperone Hsp100 family - - - - | - 654 - - - 1031020g10 NII1 nitrite reductase, chloroplastic - C_520008 - - | - 1121 (7039 2933) - - 1031021h09 CDJ1 encoding putative chloroplast DnaJ homolog - - - - | - 1583 - - - 1031023e10 - serine protease - - - - | - 7420 2359 - - olivier/mid MID Minus dominance gene (O. Vallon) - none - - | - - - - - fuhrmann/ble BLE Bleomycine resistance gene (M. Fuhrmann) - - - - | - - - - - fuhrmann/cgfp CGFP Green Fluorescent protein, adapted to Chlamydomonas codon usage (M. Fuhrmann) - - - - | - - - - - beck/gas30 GAS30 Gamete specific protein 30 (C. Beck) - - - - | - - - - - beck/phot PHOT phototropin (C. Beck) - - - - | - - - - - schroda/av642759 MDJ1 mitochondrial DNAJ protein (M. Schroda) - - - - | - - - - - stern:a01 psaA chloroplast gene - - - - | - - - - - stern:a03 psaC chloroplast gene - - - - | - - - - - stern:a05 PSAF Photosystem I subunit III AF135791 - - - | - - - - - stern:a07 PSBO Photosystem II OEE2 subunit X13826 - - - | - - - - - stern:a09 psbB chloroplast gene - - - - | - - - - - stern:a11 psbD chloroplast gene - - - - | - - - - - 874002g04 LHCBM6 Light harvesting chlorophyll a/b protein photosystem II - - - - | - 6774 - - - 894001e05 "- encdoding BiP (Hsp70 homolog of the ER) - - - - | - 5532 4431 4431;1 20021010.4431.1_go blastx SPTR:P15019 symbol:TAL1 transaldolase,[GO:0004801 transaldolase activity evidence=TAS] [GO:0006098 pentose-phosphate shunt evidence=TAS;IMP] [GO:000573" 894011b01 MMP1 (GLE) Kinoshita et al PNAS 1992 - - - - | - 5959 2763 - - 894024h09 "- protease II - - - - | - - 3202;1 - -" 894028g07 IPI1 putative isopentenyl diphosphate/dimethylallyl diphosphate isomerase - - - - | - 7242 8919 - - 894089e11 "- mercaptopyruvate sulfurtransferase(Mst1/Rdh1) [Arabidopsis thaliana] - - - - | - 4864.1 7091;1 20021010.7091.2_go blastx [GO:0004792 thiosulfate sulfurtransferase activity evidence=TAS] [GO:0009440 cyanate catabolism evidence=TAS] [GO:0005759 mito" 1031025a01 GLU3 glutamate synthase (NADPH-dependent GOGAT) - - - - | - 642.1 - - - 1031042a03 MAP1A methionine aminopeptidase type 1 - - - - | - 3685.1 449 20021010.449.2_go blastx SPTR:O59730 symbol:SPBC3E7.10 SPBC3E7.[GO:0006508 proteolysis and peptidolysis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] SPTR:O59730 symbol:SPBC3E7.10 SPBC3E7.10 50.0 789 194 9.0e-50 492 [CH on 20030713 @ 450] 1031045e11 DEGP8 serine protease DegP family - C_410039 serine protease, trypsin family, DegP type - | - 7511 - - - 1031051g02 "- arylsulfatase 6 - - - - | - 3983.1 5561;1 - -" 1031058c06 PSY1 putative phytoene synthase - - - - | - 4912 - - - 1031062a12 "- - - - - - | - 2244.1 8964;1 - -" stern:c01 psbAexon4 chloroplast gene - - - - | - - - - - stern:c03 psbZ chloroplast gene - - - - | - - - - - stern:c05 atpB ATP synthase delta subunit - - - - | - - - - - stern:c07 ATPD ATP synthase gamma subunit - - - - | - - - - - stern:c09 atpF chloroplast gene - - - - | - - - - - stern:c11 atpI chloroplast gene - - - - | - - - - - 963087a10 PPE pentose-5-phosphate 3-epimerase - - - - | - (4566 1014) - - - 963101h01 GSHA putative gamma-glutamylcysteine synthetase - - - - | - 4306 - - - 963104f10 - putative L-galactono-1 4-lactone dehydrogenase - - - - | - 8529 - - - 963119e11 FER1 pre-apoferritin - - - - | - 6072.1 - - - 1024003c02 "- FeSOD: - - - - | - 7653.1 3959;1 - -" 1024010e11 - sulfolipid sulfoquinovosyldiacylglycerol biosynthesis - - - - | - 2806 3065 - - 1031076e05 - putative DNA ligase - - - - | - 1948 - - - 1031079a07 "- protease I - - - - | - - 3342;1 - -" 1031080d10 CDJ2 encdoding putative chloroplast J-domain protein - - - - | - 4659 - 20021010.405.1_go blastx SPTR:P35191 symbol:MDJ1 DnaJ homolog,[GO:0005743 mitochondrial inner membrane evidence=IDA] [GO:0006457 protein folding evidence=IDA] [GO:0006508 proteolysis and peptidolysis evidence=IMP] [GO:0003767 co-chaperone activity evidence=IDA] SPTR:P35191 symbol:MDJ1 DnaJ homolog, involved in mitochondrial biogenesis and protein folding 48.8 1326 80 5.0e-15 195 [CH on 20030713 @ 452] 1031083g07 "- sulfur deprivation response regulator ?? - - - - | - 49.2 8105;1 - -" 1031086f11 RPT5A 26S proteasome AAA-ATPase subunit RPT5a - - - - | - 2307 - 20021010.1153.2_go blastx [GO:0003713 transcription co-activator activity evidence=TAS] [GO:0003714 transcription co-repressor activity evidence=TAS] [GO:0005634 nucleus evidence=TAS] [GO:0005837 26S proteasome evidence=TAS] SPTR:P17980 symbol:PRSA_HUMAN 26S protease regulatory subunit 6A 69.2 1039 338 1.0e-130 1186 [CH on 20030713 @ 454] 1031086a06 "- thioredoxin related protein - - - - | - 3792 4388;1 - -" stern:e01 rpoC2 chloroplast gene - - - - | - - - - - stern:e03 rpoB2 chloroplast gene - - - - | - - - - - stern:e05 rpl20 chloroplast gene - - - - | - - - - - stern:e07 rps7 chloroplast gene - - - - | - - - - - stern:e09 rps12 chloroplast gene - - - - | - - - - - stern:e11 23S chloroplast gene - - - - | - - - - - 1024050c07 HYXA hypoxanthine dehydrogenase (putative) - - - - | - - - - - 1024059c08 - 26S proteasome ATPase subunit 3 - - - - | - - 9139 20021010.9139.1_go blastx [GO:0004299 proteasome endopeptidase activity evidence=IDA] [GO:0005838 proteasome regulatory particle (sensu Eukarya) evidence=IDA] [GO:0006508 proteolysis and peptidoly 1024075c01 - sulfate transporter - - - - | - 5470.2 8830 - - 1024088a02 RPT6A 26S proteasome AAA-ATPase subunit RPT6a - - - - | - 6313.2 - 20021010.6783.1_go blastx [GO:0004299 proteasome endopeptidase activity evidence=IDA] [GO:0005838 proteasome regulatory particle (sensu Eukarya) evidence=IDA] [GO:0006508 proteolysis and peptidolysis evidence=IDA] SPTR:O18413 symbol:PRS8_DROME 26S protease regulatory subunit 8 79.5 1977 391 1.0e-174 1574 [CH on 20030713 @ 442] 1031109c02 LCYB putative lycopene beta-cyclase - - - - | - 4555 - - - 1031112e03 "- putative glutathione reductase - - - - | - - 7800;2 20021010.7800.3_go blastx SPTR:Q16881 symbol:TRXB_HUMAN Thioredoxin reductase,[GO:0004791 thioredoxin reductase (NADPH) activity evidence=TAS] [GO:0007165 signal transduction evidence=NR] SPTR:Q1" 1112028f08 EZY2 zygote-specific gene - - - - | - - 5141 - - 1112043b02 "MTD1 minus gamete specific gene - - - - | - - 8714;1 - -" 1112045g05 "- - - - - - | - - 3976;1 - -" 1112050a12 "- arylsulfatase 5 - - - - | - - 8896;1 - -" stern:g01 rrnL7 mitochondrial gene NC_001638 - - - | - - - - - stern:g03 - Actin D50838 - - - | - - - - - stern:g05 SIG1 (rpoD) chloroplast sigma factor AF525691 - - - | - - - - - stern:g07 COX3 Cytochrome c oxidase subunit III AF286058 C_40035 - - | - - - - - stern:g09 - chloroplast ascorbate peroxidase AB009084 - - - | - - - - - stern:g11 - Chlorophyll A oxygenase AB015139 - - - | - - - - - 1030076b03 "- putative glutathione-S-transferase - - - - | - - 8348;2 - -" 1030094f10 "- arylsulfatase 4 - - - - | - - 3661;1 - -" 1030101d10 "- sulfate adenylyltransferase - - - - | - - 1437;2 - -" 1030127a06 cyt b5 Similar to cytochrome b5 domain of nitrate reductase - none - - | - - 8180 - - 1030128c05 "- Glutaredoxin: - - - - | - 6787.1 7553;1 - -" 1031004a10 - unknown - - - - | - - - - - 1112112a04 "- deubiquitinating enzyme - - - - | - - 6056;1 20021010.6056.2_go blastx SPTR:O75317 symbol:UBPC_HUMAN Ubiquitin carboxyl-[GO:0004221 ubiquitin C-terminal hydrolase activity evidence=TAS] [GO:0006464 protein modification evidence=NAS] [GO:0008372 c" 1112114h02 "SAG1 plus agglutinin - - - - | - - 5469;1 - -" 1112122d05 "- sulfur deprivation response regulator - - - - | - - 8723;1 - -" kropat/cth15'end CTH1 Copper target Homolog 1 (J. Kropat) - - - - | - - - - - olivier/sppa_mt-/sppa_mt+ SPPA1 Signal peptide peptidase 1 (probe 6 of MT locus) (O. Vallon) - - - - | - - - - - olivier/pdf1b PDF1B peptide deformylase 1B, chloroplast and mitochondria (O. Vallon) - - - - | - - - - - stern:d01 ycf3 chloroplast gene - - - - | - - - - - stern:d03 ccsA chloroplast gene - - - - | - - - - - stern:d05 ycf10 chloroplast gene - - - - | - - - - - stern:d07 petA chloroplast gene - - - - | - - - - - stern:d09 petL chloroplast gene - - - - | - - - - - stern:d11 petB chloroplast gene - - - - | - - - - - 1024014d02 - cysteine proteinase (EC 3.4.22.-) - - - - | - 4827 - - - 1024014a06 PTA3 - - - - - | - 2097 - - - 1024016g05 - putative ubiquitin fusion-degradation protein - - - - | - 8492 1914 20021010.1914.2_go blastx [GO:0004843 ubiquitin-specific protease activity evidence=TAS] [GO:0001501 skeletal development evidence=TAS] [GO:0006511 ubiquitin-dependent protein cat 1024022b07 CMS putative 4-diphosphocytidyl methylerythritol synthase - - - - | - 3049 - - - 1024036d01 "- MnSOD: - - - - | - 6635.1 8448;1 - -" 1024045h12 TMT2 gamma-tocopherol methyltransferase - - - - | - 878 - - - 1031089f09 "- protein disulfide isomerase - - - - | - 5198 8775;1 - -" 1031091f07 - pol polyprotein - Volvox carteri f. nagariensis retrotransposon Osser - - - - | - 4819.3 - - - 1031092c06 - possible L-galactose dehydrogenase - - - - | - 7674 - - - 1031097a10 "- sulfate transport system permease protein - - - - | - 1859.2 8565;1 - -" 1031106h02 NIT1= NIA1 nitrate reductase - C_520041 - - | - (3758 3269) 5127 - - 1031107c11 FTR1 iron permease - - - - | - 7416 2485 - - stern:b01 psbF chloroplast gene - - - - | - - - - - stern:b03 psbJ chloroplast gene - - - - | - - - - - stern:b05 psbL chloroplast gene - - - - | - - - - - stern:b07 psbN chloroplast gene - - - - | - - - - - stern:b09 chlN chloroplast gene - - - - | - - - - - stern:b11 RBCS1 Rubisco small subunit X04471 - - - | - - - - - 894098f02 TBD1 AC115 psbD mRNA stabilization - - - - | - - - - - 963013g01.x9 - - - - - - | - - - - - 963069d06 - encdoding putative Hsp70 homolog - - - - | - - 6027 - - 963082d08 "- Peroxiredoxin: - - - - | - 8213.1 9242;1 20021010.9242.1_go blastx [GO:0005489 electron transporter activity evidence=TAS] [GO:0008379 thioredoxin peroxidase activity evidence=TAS] [GO:0006979 response to oxidative stress evidence=NR] [GO:0005737" 1031062h01 "- - - - - - | - - 2780;2 - -" 1031064h12 "- arylsulfatase 7 - - - - | - 2279.1 4554;1 - -" 1031068g11 CMK putative 4-diphosphocytidyl methylerythritol kinase - - - - | - 4169 - - - 1031069d06 CYTC cytochrome c mitochondrial - - - - | - 7928.1 - 20021010.8047.1_go blastx [GO:0006091 energy pathways evidence=ISS] [GO:0006118 electron transport evidence=ISS] [GO:0005739 mitochondrion evidence=ISS] SPTR:P00046 symbol:CYC1 CYC1 58.3 834 103 4.0e-33 349 [CH on 20030713 @ 451] 1031072g10 SRP54 SRP54 precursor chloroplast - - - - | - 884 - - - 1031072a02 CHLN Mayl et al AY160685 ( unpublished) - - - - | - 6058 - - - stern:g02 rt1 mitochondrial gene NC_001638 - - - | - - - - - stern:g04 CrGFP CrGFP AF188479 - - - | - - - - - stern:g06 - Chlorophyll A/B binding protein AF244524 - - - | - - - - - stern:g08 28S 28S AF183463 - - - | - - - - - stern:g10 ARS1 Ars1 - - - - | - - - - - stern:g12 MDH1 NAD-dependent malate dehydrogenase U42979 - - - | - - - - - 1030083c11 "- Cysteine synthase chloroplast precursor - - - - | - - 8639;1 20021010.8639.1_go blastx SPTR:O45679 symbol:K10H10.[GO:0005739 mitochondrion evidence=ISS] SPTR:O45679 symbol:K10H10.2 66.0 497 106 6.0e-35 361 [CH on 20030713 @ 445]" 1030096g09 CHLB Li et al Plant cell 5 (12):171817-1829 (1993) - - - - | - - 7652 - - 1030123d10 "- Cysteine synthase chloroplast precursor - - - - | - 6306.1 93;1 20021010.93.2_go blastx SPTR:O45679 symbol:K10H10.[GO:0005739 mitochondrion evidence=ISS] SPTR:O45679 symbol:K10H10.2 45.9 1071 109 2.0e-18 223 [CH on 20030713 @ 446]" 1030128c06 "- Peptide methionine sulfoxide reductase - - - - | - 3751.2 4584;1 - -" 1031006b12 "NRT2;2 = NAR4 CRNAR4GNA component of high-affinity nitrate transporter - - - - | - 751 9412;1 - -" 1112113f10 "- sulfate adenylyltransferase - - - - | - 820.2 1668;1 - -" 1112120b04 "- putative serine protease - - - - | - - 2790;1 - -" kropat/cytochromec6 CYC6 chloroplast cytochrome c6, alternative electron carrier in photosynthesis (J. Kropat) - - - - | - - - - - olivier/clpc2 CLPC2 chloroplast HSP100 chaperone, may be part of Clp protease (O. Vallon) - C_4010001 - - | - - - - - olivier/lao2 LAO2 L-amino acid oxidase, probable (O. Vallon) - none - - | - - - - - olivier/sfu SFU FUS1 Sexual FUsion protein, involved in mating, MT+ specific (O. Vallon) - C_1570034 - - | - - - - - stern:e02 rpoB1 chloroplast gene - - - - | - - - - - stern:e04 rpoA chloroplast gene - - - - | - - - - - stern:e06 clpP1 chloroplast gene - - - - | - - - - - stern:e08 rps9 chloroplast gene - - - - | - - - - - stern:e10 rps18 chloroplast gene - - - - | - - - - - stern:e12 16S chloroplast gene - - - - | - - - - - 1024052e03 - putative GDP-D-mannose pyrophosphorylase - - - - | - 1754 - 20021010.5041.1_go blastx SPTR:O74484 symbol:SPCC1906.01 SPCC1906.[GO:0019538 protein metabolism evidence=ISS] [GO:0006464 protein modification evidence=ISS] SPTR:O74484 symbol:SPCC1906.0 1024070d10 - putative copper chaperone cox11 - - - - | - 4579.2 - - - 1024078g05 GSHB putative glutathione synthetase - - - - | - - - 20021010.448.1_go blastx [GO:0003723 RNA binding activity evidence=TAS] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0006412 protein biosynthesis evidence=TAS] [GO:0005843 cytosolic small ribosomal subunit (sensu Eukarya) evidence=TAS] SPTR:P46782 symbol:RS5_HUMAN 40S ribosomal protein S5 40S ribosomal protein S5 81.6 742 190 3.0e-88 823 [CH on 20030713 @ 441] 1024086c11 "- methionine sulfoxide reductase - - - - | - 5561.1 4192;1 - -" 1024093d04 ZEP1 zeaxanthin epoxidase - - - - | - - 7311 - - 1024100c06 "- Cysteine desulfurase mitochondrial precursor - - - - | - 7373.1 3031;3 - -" 1031110h04 "GAS18 Beck et al unpublished - - - - | - (5436 2026 357 4716) 6071;2 - -" 1112028c01 "- sulfate ABC transporter - - - - | - 152.1 1865;1 - -" 1112034f03 "MMP2 - - - - - | - 1817 4628;1 - -" 1112045e09 "MMP4 matrix metalloprotease - - - - | - 117 8545;1 - -" 1112049b04 "EZY2 zygote-specific gene (alternative 3' end) - - - - | - - 4296;1 - -" 1112051d02 "- probable ferredoxin - - - - | - 7133.1 6014;1 - -" stern:c02 psbAexon2 chloroplast gene - - - - | - - - - - stern:c04 atpA ATP synthase alpha subunit - - - - | - - - - - stern:c06 ATPC ATP synthase delta subunit M73493 - - - | - - - - - stern:c08 atpE chloroplast gene - - - - | - - - - - stern:c10 atpH chloroplast gene - - - - | - - - - - stern:c12 ycf12 chloroplast gene - - - - | - - - - - 963091c12 "- sulfated surface glycoprotein - - - - | - 7989.1 7877;1 - -" 963104b11 CLPP5 clp protease active subunit of chloroplast ClpP complex - C_1620010 - - | - 2834 2180 20021010.2180.1_go blastx SPTR:O88696 symbol:CLPP_MOUSE Putative ATP-dependent Clp protease proteolytic subunit,[GO:0005739 mitochondrion evidence=IDA] SPTR:O88696 symbol:CLPP_MOUSE Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor 52.5 1294 179 3.0e-48 481 [CH on 20030713 @ 435] 963105g02 - similar to cytochrome b5 reductase isoform II from zea mays - - - - | - 8589.2 - - - 963123f10 "NRT2;1= NAR3 CRNAR3GNA component of high-affinity nitrate/nitrite transporter - - - - | - 1944.1 63;1 - -" 1024009h10 "- putative glutathione-S-transferase - - - - | - - 3284;2 - -" 1024010h04 "- Glutaredoxin: - - - - | - 7451.1 9012;1 - -" 1031078d05 "- putative phytyltransferase - - - - | - - 3531;2 - -" 1031080d08 FOX1 multicopper ferroxidase - - - - | - 4276.1 - - - 1031081f04 DXR putative deoxyxylulose 5-P reductoisomerase - - - - | - 1619 - - - 1031084e01 "- sulfotransferase - - - - | - 6825.2 2595;2 - -" 1031086c11 "- sulfate transporter - - - - | - 2396 7095;2 - -" 1031086d07 "ISCA2 iron sulfur cluster assembling protein IscA - - - - | - 4456.2 2182;2 - -" stern:a02 psaB chloroplast gene - - - - | - - - - - stern:a04 PSAD Photosystem I subunit II AF335592 - - - | - - - - - stern:a06 PSAG Photosystem I subunit V X15165 - - - | - - - - - stern:a08 PSBP Photosystem II OEE1subunit M15187 - - - | - - - - - stern:a10 psbC chloroplast gene - - - - | - - - - - stern:a12 psbE chloroplast gene - - - - | - - - - - 874004f11 - LHC - - - - | - 1332.1 - - - 894007f10 "- Ascorbate peroxidase: - - - - | - 8267 6257;2 - -" 894022c06 "- protein disulfide isomerase or malate dehydrogenase ? - - - - | - 2948.1 5381;1 20021010.5381.2_go blastx SPTR:Q9Y7R8 symbol:SPCC306.08C SPCC306.[GO:0016052 carbohydrate catabolism evidence=ISS] [GO:0006091 energy pathways evidence=ISS] [GO:000609" 894033b06 - mutT-like - - - - | - 8144.1 - - - 894089b12 "- Dinitrogenase reductase activating glycohydrolase - - - - | - 5936.2 4564;2 - -" 1031036b05 - carboxy-terminal proteinase D1-like protein - - - - | - 1173 1094 - - 1031043c06 URI uricase = urate oxidase - - - - | - (871.1 4258.2) - - - 1031046g09 "- Sac3-like sulfur stress protein-kinase - - - - | - 2629.2 2246;1 - -" 1031054d01 "- Glutathione peroxidase: - - - - | - 7183.2 1947;2 - -" 1031061g07 "MMP3 Matrix metalloprotease - - - - | - 2364.2 9368;2 - -" 1031062f06 "- - - - - - | - - 4076;1 - -" stern:h02 AOX1 alternative oxidase 1 AF047832 - - - | - - - - - stern:h04 tufA chloroplast elongation factor "EF-Tu - - - - | - - - - -""" tufA "EF-Tu """ - stern:h06 - glycine decarboxylase complex AF387366 - - - | - - - - - stern:h08 ORF2971A chloroplast gene - - - - | - - - - - stern:h10 rpoC1b chloroplast gene - - - - | - - - - - stern:h12 clpB2 clpB2 - - - - | - - - - - 1031006d09 PMA2 Plasma membrane ATPase AY058212 - - - - | - 7280 2767 - - 1031007b08 DEGP6 serine protease DegP family - C_240116 serine protease, trypsin family, DegP type - | - 8578 - - - 1031014c02 "- protease II - - - - | - - 4048;1 - -" 1031021h10 NAR5 Nar1-like protein - - - - | - 4354 (7879 9317) - - 1031022e03 "- Glutathione peroxidase: - - - - | - 197.1 6888;3 20021010.6888.1_go blastx [GO:0004602 glutathione peroxidase activity evidence=IDA] [GO:0006979 response to oxidative stress evidence=IMP] [GO:0008372 cellular_component unknown evidence=ND] SPTR:P" 1031023h02 HSP70A encoding cytosolic Hsp70 protein (Müller F. W. Igloi G. L. and Beck C. F. 1992 Structure of a gene encoding heat-shock protein HSP70 from the unicellular alga Chlamydomonas reinhardtii Gene 111 165-173.) - - - - | - 3200 - 20021010.8116.2_go blastx SPTR:Q93601 symbol:hsp-[GO:0007345 embryogenesis and morphogenesis evidence=IMP] [GO:0000003 reproduction evidence=IMP] SPTR:Q93601 symbol:hsp-1 70.4 1643 507 0.0e+00 1790 [CH on 20030713 @ 448] chiungwen/lpb1 LPB1 involved in response to phosphorus deprivation - - - - | - - - - - fuhrmann/crluc LUC Luciferase, adapted for Chlamydomonas codon usage (M. Fuhrmann) - - - - | - - - - - nyogi/lycopeneepsiloncyclase - lycopene epsilon cyclase (K. Niyogi) - - - - | - - - - - beck/lrg5 LRG5 Light Regulation of Gametogenesis (C. Beck) - - - - | - - - - - schroda/av643891 - DnaJ protein, probably organelle-targeted - - - - | - - - - - ?/salmondna - Salmon sperm DNA - - - - | - - - - - stern:f02 rpl5 chloroplast gene - - - - | - - - - - stern:f04 rpl16 chloroplast gene - - - - | - - - - - stern:f06 nad2 mitochondrial gene NC_001638 - - - | - - - - - stern:f08 nad5 mitochondrial gene NC_001638 - - - | - - - - - stern:f10 cox1 mitochondrial gene NC_001638 - - - | - - - - - stern:f12 rrnS4 mitochondrial gene NC_001638 - - - | - - - - - 1024120h04 "- encdoding putative chloroplast Hsp90 homolog - - - - | - (5229 7178 6981 5207) 7178;1 - -" 1030020g07 "- - - - - - | - - 1067;1 - -" 1030029a01 "- sulfite reductase (NADPH) flavoprotein alpha-component - - - - | - - 4414;1 - -" 1030046c05 "- ubiquinol--cytochrome-c reductase (EC1.10.2.2) Rieske iron-sulfur protein - - - - | - 6929.1 3115;1 20021010.3115.1_go blastx SPTR:P08067 symbol:RIP1 Rieske iron-[GO:0009060 aerobic respiration evidence=IMP] [GO:0008121 ubiquinol-cytochrome c reduc" 1030061e03 "AMT1 AF479643 ammonium transporter 1 - - - - | - - (3400 2567;1) - -" 1030075a06 - protein disulfide isomerase - - - - | - - 2496 - - 1112084g04 "- Peptide methionine sulfoxide reductase - - - - | - 2165.2 6191;1 20021010.6191.1_go blastx [GO:0008113 protein-methionine-S-oxide reductase activity evidence=TAS] [GO:0006464 protein modification evidence=TAS] [GO:0006555 methionine metabolism ev" 1112091h05 "- - - - - - | - - 6610;2 20021010.6610.2_go blastx SPTR:P34897 symbol:GLYM_HUMAN Serine hydroxymethyltransferase,[GO:0005739 mitochondrion evidence=TAS] SPTR:P34897 symbol:GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial precursor 63.7 2022" 1112094d03 "MDH1 NADP-Malate dehydrogenase CRE277281 - C_520009 - - | - 4501.1 635;1 - -" 1112104e11 - putative farnesyl diphosphate synthase - - - - | - - (4857 5884) 20021010.4857.2_go blastx SPTR:P08524 symbol:ERG20 farnesyl diphosphate synthetase (FPP synthetase)[GO:0006696 ergosterol biosynthesis evidence=TAS] [GO:0005829 cytosol evidence=TAS 1112110e12 "- Glutathione peroxidase: - - - - | - 5231 4879;1 20021010.4879.1_go blastx [GO:0004602 glutathione peroxidase activity evidence=IDA] [GO:0006979 response to oxidative stress evidence=IMP] [GO:0008372 cellular_component unknown evidence=ND] SPTR:P3" 1112111b08 SAD1 minus agglutinin - - - - | - - 5988 - - stern:d02 ycf4 chloroplast gene - - - - | - - - - - stern:d04 PSR1 Phosphate starvation response gene AF174532 - - - | - - - - - stern:d06 PETC cytochrome b6f Rieske subunit X76299 - - - | - - - - - stern:d08 PETE plastocyanin L07282 - - - | - - - - - stern:d10 petG chloroplast gene - - - - | - - - - - stern:d12 petD chloroplast gene - - - - | - - - - - 1024014g07 "PTA1 Pi transporter - - - - | - 4505.1 5625;1 - -" 1024016b02 CLPB2 Chaperone Hsp100 family - C_1610024 - - | - 3911 - - - 1024020e02 CLPR1 clp protease inactive subunit of chloroplast ClpP complex - C_240023 - - | - (7150.1 7150.2) - - - 1024027c05 "- cysQ protein [Vibrio cholerae] - - - - | - 6908.2 6535;1 - -" 1024045g03 CLPR3 clp protease inactive subunit of chloroplast ClpP complex - C_1050047 - - | - 113 - - - 1024045b06 - putative methyltransferase - - - - | - 3674 - - - 1031089c02 - putative Sco1 protein - - - - | - 5951.1 - - - 1031092d12 "ALB3.1 Albino 3 required for LHCP insertion chloroplast - - - - | - (8089.1 7279) (7115;2 2747) - -" 1031097a08 DEGP4 serine protease DegP family - C_280028 serine protease, trypsin family, DegP - | - 1369 - - - 1031098f11 - arylsulfatase 2 - - - - | - (1676.2 1319.2 4329.4) 1241 - - 1031106c01 PPX1 Randolph et al Plant Mol Biol 38(5):839-859 (1998) - - - - | - (7 8117) - 20021010.3225.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0016282 eukaryotic 43S pre-initiation complex evidence=ISS] SPTR:Q09130 symbol:TIF213 TIF213 76.0 1265 362 1.0e-163 1477 [CH on 20030713 @ 455] 1031108a08 - p60 katanin - - - - | - 6290 5971 20021010.5971.2_go blastx SPTR:Q9WV86 symbol:Katna1 katanin p60 (ATPase-containing)[GO:0005634 nucleus evidence=IDA] [GO:0005886 plasma membrane evidence=IDA] [GO:0005811 lipid particle evidence=IDA] [GO:000016 stern:b02 psbH chloroplast gene - - - - | - - - - - stern:b04 psbK chloroplast gene - - - - | - - - - - stern:b06 psbM chloroplast gene - - - - | - - - - - stern:b08 chlL chloroplast gene - - - - | - - - - - stern:b10 rbcL chloroplast gene - - - - | - - - - - stern:b12 RBCS2 Rubisco small subunit X04472 - - - | - - - - - 963003d07.x9 - - - - - - | - - - - - 963052g06 - LHC - - - - | - 2256.1 - - - 963055e10 - putative cysteine synthase - - - - | - 4880 6776 20021010.6776.1_go blastx SPTR:P87131 symbol:SPAC3A12.17C SPAC3A12.[GO:0006534 cysteine metabolism evidence=ISS] [GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and derivativ 963076d09.x9 - - - - - - | - - - - - 963085h01 ISCU iron sulfur cluster assembling protein IscU - - - - | - 437.1 - 20021010.2411.1_go blastx [GO:0005506 iron ion binding activity evidence=TAS] [GO:0016226 iron-sulfur cluster assembly evidence=TAS] [GO:0005739 mitochondrion evidence=TAS] SPTR:Q9H1K1 symbol:Q9H1K1 ISCU2 ISCU2 81.7 1111 120 2.0e-52 517 [CH on 20030713 @ 426] 1031064c06 CLPB1 Chaperone Hsp100 family - - - - | - 8200 - - - 1031067a11 ZDS1 putative zeta-carotene desaturase - - - - | - - 3982 - - 1031068a12 - putative monodehydroascorbate reductase - - - - | - - 3579 - - 1031069f10 - protein disulfide isomerase - - - - | - 5507.1 8415 - - 1031072e09 "- serine protease subtilase family - - - - | - - 1710;1 - -" 1031074f05 ABCC ABC-like transporter (Beck. et al unpublished) - - - - | - 1833 - - - 894007c04 "- - BE024975 - - mitochondrial ef-tu | - - 2612;1 - -" 894007d02 "- - BE024995 - - similar to an unidentified arabidopsis protein | - - 4054;1 - -" 894007b10 "- - BE024964 - - - | - - 7699;1 - -" 894002f05 "- - BE024383 - - - | - - 4517;1 - -" 894002h09 "- - BE024435 - - obtusifoliol 14-alpha demethylase cyp51 | - - 8123;1 - -" 894002h11 "- - BE024439 - - - | - - 3949;3 - -" 894002f04 "- - BE024381 - - - | - - 1597;1 - -" 894002g05 "RPSCL20 RPSCL20 BE024406 - RPSCL20 conflicting blast results | - 825 7056;1 Putative 30S ribosomal protein S20 [At3g15190.1, Arabidopsis] {9e-13} [AG/ZD on 20030501 @ 9141]" 894003g01 "- - BE024560 - - phenylalanyl trna synthetase | - - 7371;2 - -" 894004a09 "PSAL Photosystem I subunit L BE024605 - Photosystem I subunit L psal | - none 8552;1 - -" 894004g09 "- - BE024660 - - - | - - 1272;2 - -" 894004b11 - - BE024614 - - - | - - - - - 894004f12 "- - BE024652 - - ctr1-like protein kinase | - - 8158;1 - -" 894004h09 "- - BE024670 - - - | - - 5579;3 - -" 894004c12 "- - BE024625 - - possibly matches ubiquitin carrier protein e2 | - - 3273;2 - -" 894006h09 "CAH3 alpha-type carbonic anhydrase, chloroplast lumen BE024927 C_710031 alpha-type carbonic anhydrase, chloroplast lumen intracellular carbonic anhydrase, cah3; confirmed, matches (u40871) (u73856) | - - 6276;1 - -" 894006a10 "- - BE024776 - - - | - - 5194;1 - -" 894006a04 "- - BE024766 - - - | - - 5629;1 - -" 894006a07 "- - BE024771 - - similar to an unidentified arabidopsis protein (af439821) at4g26550/m3e9_20 | - - 7106;1 - -" 894006g05 "ATPC ATP synthase gamma chain, short transcript BE024896 C_200074 ATP synthase gamma chain, short transcript atp synthase gamma subunit (atpc); confirmed, matches (j04219) | - 8211 6330;1 - -" 894006c11 "XPO1 exportin BE024819 - exportin xpo1 gene, aka crm1-like protein | - 7297 7346;2 20021010.7297.3_go blastx [GO:0005654 nucleoplasm evidence=TAS] [GO:0005737 cytoplasm evidence=TAS] [GO:0005635 nuclear membrane evidence=TAS] SPTR:O14980 symbol:O14980 CRM1 protein CRM1 protein 49.3 518 146 4.0e-35 363 [CH on 20030713 @ 67]" 894006a03 "- - BE024764 - - - | - - 296;2 - -" 894007g03 "- - BE025056 - - - | - - 7761;2 - -" 894024d01 - Unknown BE211893 - Unknown - | - none - - - 894024g09 - - BE211937 - - - | - - - - - 894024f09 "HSP90A Heat Shock Protein 90, cytosolic BE211922 C_730014 Heat Shock Protein 90, cytosolic heat shock protein, probably hsp80 | - 5909 6647;1 20021010.5909.1_go blastx SPTR:P08238 symbol:HS9B_HUMAN Heat shock protein HSP 90-[GO:0003773 heat shock protein activity evidence=NAS] [GO:0005737 cytoplasm evidence=NAS] SPTR:P08238 symbol:HS9B_HUMAN Heat shock protein HSP 90-beta 62.4 1644 170 1.0e-106 526 [CH on 20030713 @ 117]" 894018h05 "- - BE122296 - - probably a microtubule-interacting protein, similar to human mip-t3 | - - 2306;3 - -" 894018b01 "- - - - - - | - - 4546;1 - -" 894018d09 "- - BE122244 - - beta-ketoacyl-coa synthase, fae2 gene | - - 216;2 - -" 894018c02 "- Unknown, some similarity to protein phosphatase - - Unknown, some similarity to protein phosphatase - | - 446 8098;2 - -" 894018d10 "- - BE122246 - - - | - - 2953;2 - -" 894018e11 "- - BE122261 - - - | - - 4869;1 - -" 894020c12 "SBDP Selenium binding protein BE129125 - Selenium binding protein similar to a selenium binding protein from medicago | - 5894 3046;1 20021010.5894.1_go blastx SPTR:Q13228 symbol:SBP1_HUMAN Selenium-binding protein 1 Selenium-[GO:0008430 selenium binding activity evidence=TAS] SPTR:Q13228 symbol:SBP1_HUMAN Selenium-binding protein 1 Selenium-binding protein 1 50.3 2511 479 1.0e-134 1230 [CH on 20030713 @ 108]" 894020f09 "- - BE128972 - - phosphoglucomutase | - - 6983;1 20021010.4438.1_go blastx SPTR:O74374 symbol:SPBC32F12.10 SPBC32F12.[GO:0005975 carbohydrate metabolism evidence=ISS] SPTR:O74374 symbol:SPBC32F12.10 SPBC32F12.10 53.0 2413 558 1.0e-167 1506 [CH on 20" 894020g07 "- - BE128987 - - - | - - 8623;2 Chloroplast ppGpp synthase/degradase* [AG/ZD on 20030501 @ 9195]" 894020c10 "- - BE129121 - - resembles cyanobacterial alcohol dehydrogenase | - - 3287;2 - -" 894020h05 "- - BE129000 - - dynein outer arm gamma heavy chain (oda2); confirmed, matches (u15303) | - - 7482;1 - -" 894021a12 "- - BE129029 - - probably ribose 5-phosphate isomerase | - - 1821;2 - -" 894022g12 "- - BE129374 - - - | - - 251;4 - -" 894022g09 "- - BE129368 - - no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - - 5340;1 - -" 894022g03 "PCK phosphoenolpyruvate carboxykinase BE129358 - phosphoenolpyruvate carboxykinase phosphoenolpyruvate carboxykinase | - 5947 5977;2 20021010.5947.3_go blastx [GO:0006094 gluconeogenesis evidence=TAS] [GO:0005829 cytosol evidence=TAS] [GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity evidence=IMP] SPTR:P10963 symbol:PCK1 phosphoenolpyruvate carboxylkinase 58.0 2243 367 1.0e-119 1095 [CH on 20030713 @ 113]" 894022b08 "CAH1 alpha-type carbonic anhydrase, periplasmic BE129268 C_40151 alpha-type carbonic anhydrase, periplasmic carbonic anhydrase cah1; confirmed, matches (d90206); also see (x54487, ab026126) | - - 2036;1 - -" 894022f04 "- - BE129344 - - similar to a hypothetical protein from the halotolerant chlamydomonas sp. hs-5, accession number au066522 | - - 1320;1 - -" 894022b10 "- Unknown BE129271 - Unknown - | - 7541 2009;4 - -" 894024d10 "CHLH1 CHLH1 BE211904 - CHLH1 magnesium chelatase h subunit chlh; confirmed, matches (af069768) | - 150 4417;2 - -" 894024h05 "- - - - - - | - - 2127;2 - -" 894024g10 "- - BE211938 - - similar to a putative arabidopsis protein (nc_003075) | - - 4274;2 - -" 894018h12 "- - BE122305 - - probably a thioredoxin of some type | - - 5887;2 - -" 894017b12 "VFL2 centrin (caltractin) BE122090 - centrin (caltractin) centrin/caltractin; confirmed, matches (x57973) | - 7239 5471;1 20021010.7239.1_go blastx [GO:0005509 calcium ion binding activity evidence=NAS] [GO:0007067 mitosis evidence=NAS] [GO:0005813 centrosome evidence=NAS] SPTR:P41208 symbol:CET2_HUMAN Centrin 2 57.8 1067 166 4.0e-45 453 [CH on 20030713 @ 100]" 894001b01 "- - BE024147 - - recheck: some similarity to a human histidine-rich glycoprotein; 1354.1 matches glutamine synthetase u46207 | - - 5338;3 - -" 894001e04 "- - BE024210 - - - | - - 7925;1 - -" 894001h05 "- - BE024268 - - - | - - 8538;2 - -" 894001f10 "- - BE024241 - - - | - - 5290;1 - -" 894002d08 "- Unknown BE024352 - Unknown - | - 6977 142;2 - -" 894002h07 "- - BE024431 - - - | - - 6541;1 - -" 894005b12 LIL POLYPEPTIDE (LHC FAMILY) LHC family - - LHC family - | - none - - - 894006a06 "RBL3 RBL30 BE024769 - RBL30 60s ribosomal protein l30 | - 111 3366;1 20021010.111.1_go blastx [GO:0007422 peripheral nervous system development evidence=NAS] SPTR:Q9VJ19 symbol:Q9VJ19 CG10652 protein 74.5 602 98 8.0e-38 387 [CH on 20030713 @ 65]" 894006b02 "ALD3 fructose-1,6-bisphosphate aldolase BE024782 - fructose-1,6-bisphosphate aldolase fructose-bisphosphate aldolase? moderately good sequence similarity to dunaliella and chlamy genes previously sequenced (ab052696), but definitely not identical | - 4808 1215;1 20021010.4808.1_go blastx SPTR:P07764 symbol:ALF_DROME Fructose-[GO:0004332 fructose-bisphosphate aldolase activity evidence=IDA] [GO:0006096 glycolysis evidence=IDA] SPTR:P07764 symbol:ALF_DROME Fructose-bisphosphate aldolase 52.6 1617 346 3.0e-91 853 [CH on 20030713 @ 66]" 894006f03 "- - BE024872 - - similar to bacterial d-3-phosphoglycerate dehydrogenase | - - 3296;2 - -" 894006e06 "- - - - - - | - - 391;1 - -" 894009a05 "- - BE056380 - - - | - - 180;1 - -" 894010g09 "- - - - - - | - - 7206;2 - -" 894010g10 "- - BE056664 - - - | - - 434;1 - -" 894011b03 "- - BE056705 - - - | - - 5581;2 - -" 894011f05 - - BE056777 - - - | - - - - - 894011b11 "- - BE056717 - - 40s ribosomal protein s4 | - - 8563;1 - -" 894017b03 "- - - - - - | - - 2311;1 - -" 894017a09 "- - BE122078 - - chloroplast membrane protein (arabidopsis albino3) | - - 1603;2 - -" 894017c01 "- - BE122092 - - - | - - 6291;1 - -" 894017f05 "- - BE122141 - - - | - - 5282;2 - -" 894015a12 "- - BE121791 - - - | - - 7109;1 - -" 894007d07 "- - BE025004 - - - | - - 5741;1 - -" 894007a04 "- - BE024937 - - conflicting blast results on contig | - - 1611;2 - -" 894008a10 "- - BE025099 - - - | - - 6902;2 - -" 894008b07 "- - BE025112 - - replication factor c 40kda subunit | - - 1210;1 20021010.4169.1_go blastx [GO:0003687 DNA replication factor evidence=NR] [GO:0005524 ATP binding activity evidence=TAS] [GO:0005663 DNA replication factor C complex evidence=TAS] SPT" 894008d04 "- - BE025146 - - hydroxypyruvate reductase | - - 717;2 - -" 894008a06 "- - BE025092 - - conflicting blast results | - - 5904;1 - -" 894009b03 "- Unknown, weak similarity to RNE/RNG ribonuclease BE056399 - Unknown, weak similarity to RNE/RNG ribonuclease - | - none 4135;1 - -" 894009b04 "- - BE056401 - - - | - - 5243;1 - -" 894009h01 - - BE056503 - - - | - - - - - 894010h07 "- - BE056680 - - - | - - 3739;1 - -" 894010e09 "- - BE056621 - - some similarity to bithoraxoid or roadblock proteins, but does not seem to match the previously described chlamydomonas lc7 gene | - - 1762;1 - -" 894010a08 "- - BE056536 - - - | - - 2183;1 - -" 894011e08 "- - BE056765 - - - | - - 5329;2 - -" 894011f03 "RBS16 RBS16 BE056774 - RBS16 40s ribosomal protein s16 | - none 6269;1 - -" 894011b10 "- - BE056715 - - calmodulin-like protein | - - 1478;1 - -" 894012c02 - - - - - - | - - - - - 894012g12 "- - BE121525 - - glutathione s-transferase | - - 8103;2 - -" 894012e04 "- - BE121498 - - - | - - 6374;1 - -" 894014d02 "- - BE121701 - - - | - - 4350;1 - -" 894014b08 "- - BE121679 - - similar to an unknown arabidopsis protein (af387002), possibly inositol monophophatase | - - 6706;1 - -" 894014h08 "- - BE121766 - - dynein outer arm 19 kda light chain lc2 (u89649) | - - 8072;1 - -" 894014a03 "- - BE121655 - - chloroplast ribosomal protein s17 | - - 6909;1 - -" 894015f12 "- - BE121880 - - - | - - 3946;1 - -" 894019c04 "- - BE122337 - - - | - - 4352;1 - -" 894003d10 - - BE024515 - - - | - - - - - 894003g10 "- - BE024575 - - - | - - 5392;1 - -" 894003a02 "- - BE024444 - - - | - - 8017;3 - -" 894004g05 "- - BE024656 - - - | - - 6298;1 - -" 894004a05 "- - BE024602 - - - | - - 4684;1 - -" 894004e02 "- - BE024635 - - similar to j1a crystallin [tripedalia cystophora] | - - 6100;2 - -" 894006b03 "DES6 omega-6 desaturase. BE024783 - omega-6 desaturase. chloroplast omega-6 desaturase; confirmed, matches (ab007640) | - none 2865;1 - -" 894006b12 "- - - - - - | - - 125;2 - -" 894007e04 "- - BE025019 - - - | - - 5744;1 - -" 894007e01 "- - BE025013 - - - | - - 2399;1 - -" 894007e10 "- - BE025029 - - glycine-rich protein | - - 491;1 - -" 894009c03 "- - - - - - | - - 7494;1 - -" 894014a12 "- - BE121666 - - resembles cyanobacterial alcohol dehydrogenase | - - 3287;2 - -" 894014g02 - Putative lumenal 17.4 kDa protein BE121749 - Putative lumenal 17.4 kDa protein - | - 976 - - - 894015d05 "- - BE121835 - - gmp synthase | - - 648;1 20021010.6848.2_go blastx [GO:0000004 biological_process unknown evidence=ND] [GO:0005554 molecular_function unknown evidence=ND] [GO:0008372 cellular_component unknown evidence=ND] SPTR:Q12029 symbol:YOR27" 894016b03 "- - BE121933 - - - | - - 1174;1 - -" 894016a11 "- - BE121927 - - similar to an unidentified arabidopsis protein (ay050453) at3g20560/k10d20_9 | - - 3712;2 - -" 894016e03 "- - BE121987 - - glycerol-3-phosphate acyltransferase | - - 5910;2 - -" 894018a08 - - - - - - | - - - - - 894018d01 "- - BE122232 - - transcription factor similar to yeast dcp1 | - - 6125;1 - -" 894018f09 "- Putative HCP-like hydroxylamine reductase BE122271 - Putative HCP-like hydroxylamine reductase prismane protein | - 6945 2418;1 Putative prismane protein [Acidithiobacillus ferrooxidans] {e-104} [AG/ZD on 20030501 @ 9163]" 894019h03 "- - BE122415 - - dtdp-d-glucose 4,6-dehydratase | - - 5666;2 - -" 894019h05 "- - BE122418 - - similar to arabidopsis protein (nc_003076) | - - 6979;1 - -" 894008c03 "AOX4 chloroplast plastoquinol-oxygen oxidoreductase BE025124 - chloroplast plastoquinol-oxygen oxidoreductase somewhat similar to arabidopsis immutans protein | - 1860 5213;1 Chloroplast quinol-to-oxygen oxidoreductase [AG/ZD on 20030501 @ 9196]" 894008d03 "- Cytosolic peptidyl-prolyl cis-trans isomerase BE025144 - Cytosolic peptidyl-prolyl cis-trans isomerase cyclophilin 1; confirmed, matches (af052206) | - 2231 3350;1 20021010.2231.1_go blastx SPTR:P30405 symbol:CYPM_HUMAN Peptidyl-prolyl cis-trans iso" 894008e09 "- - BE025176 - - - | - - 7807;1 - -" 894008e12 "- Unknown, possible transposable element BE025182 - Unknown, possible transposable element - | - 6410 8340;1 - -" 894008e11 "- SKP1 E3 ubiquitin ligase; similar to Skp1 BE025180 - SKP1 E3 ubiquitin ligase; similar to Skp1 skp1 kinetochore protein | - 7585 3240;1 20021010.7585.1_go blastx SPTR:Q93647 symbol:skr-[GO:0007345 embryogenesis and morphogenesis evidence=IMP] [GO" 894009b02 "- - BE056397 - - conflicting blast results | - - 3335;1 - -" 894010c12 "- - BE056585 - - some similar to a conserved protein from drosophila and caenorhabditis | - - 655;1 - -" 894010g03 "- Similar to Arabidopsis SC35-like splicing factor SCL35 BE056654 - Similar to Arabidopsis SC35-like splicing factor SCL35 similar to arabidopsis sc35-like splicing factor scl33, 33 kda | - 8151 3183;2 20021010.8151.1_go blastx SPTR:O60572 symbol:O6057" 894011d05 "- - BE056743 - - - | - - 4664;3 - -" 894011b02 "- - BE056703 - - - | - - 5617;1 - -" 894011f11 "- Unknown BE056787 - Unknown similar to an unknown arabidopsis protein (nc_003076) | - 9270 4532;1 - -" 894011h03 "- - BE056813 - - 26s proteasome beta subunit | - - 8223;1 20021010.748.2_go blastx [GO:0005837 26S proteasome evidence=TAS] SPTR:P28074 symbol:PSB5_HUMAN Proteasome subunit beta type 5 precursor 71.9 716 96 6.0e-53 369 [CH on 20030713 @ 89]" 894012g02 "- - BE121514 - - 60s ribosomal protein l26 | - - 4904;1 - -" 894013g10 - - BE121631 - - oxidoreductase of some kind | - - - - - 894013a09 "- Unknown BE121543 - Unknown similar to an unidentified volvox protein (af110789); homologs in arabidopsis and cyanobacteria | - 5695 1164;1 - -" 894013b11 "- - BE121559 - - - | - - 8275;1 - -" 894013f09 "- - BE121612 - - translation factor ycio? blast search matches an unidentified arabidopsis protein (ac010797) | - - 2907;1 - -" 894014d09 "- - BE121711 - - - | - - 4231;1 - -" 894016e05 "- - BE121991 - - - | - - 3159;2 - -" 894016b11 "- - BE121944 - - - | - - 4592;2 - -" 894016g09 "- - BE122041 - - no significant similarity to any previous chlamy sequence in genbank | - - 100;2 - -" 894016g11 "- - BE122045 - - - | - - 4170;1 - -" 894016e04 - - BE121989 - - cyclin dependent kinase c | - - - 20021010.6700.2_go blastx SPTR:Q14004 symbol:CDL5_HUMAN Cell division cycle 2-[GO:0007088 regulation of mitosis evidence=TAS] [GO:0007275 development evidence=TAS] [GO:0008284 positive regulation o 894016g03 "- Unknown (cr-40a20) BE122029 - Unknown (cr-40a20) - | - 833 2887;2 - -" 894016e07 "- - BE121995 - - malate dehydrogenase (nad+), mdh2, probably mitochondrial; confirmed, matches (u40212) | - - - 20021010.5446.1_go blastx SPTR:P40926 symbol:MDHM_HUMAN Malate dehydrogenase,[GO:0030060 L-malate dehydrogenase activity evidence=NAS] [GO:" 894017e12 "- - BE122134 - - similar to an unidentified arabidopsis protein (nc_003075) | - - 6796;1 - -" 894017h07 "- - BE122173 - - - | - - 5540;2 - -" 894017c09 "PETF1 ferredoxin BE122101 - ferredoxin ferredoxin; confirmed, matches (u29516) | - 1713 7955;1 Ferredoxin [AG/ZD on 20030501 @ 9198]" 894017e05 "- - BE122124 - - - | - - 5074;2 - -" 894019f12 "- - BE122394 - - - | - - 5090;1 - -" 894019d08 "- - BE122359 - - chloroplast ribosomal protein l11 | - - 4999;2 - -" 894019f07 "- - BE122390 - - n-carbamyl-l-amino acid amidohydrolase-like protein | - - 829;1 - -" 894020a07 "- - BE128967 - - - | - - 7040;1 - -" 894020f03 "- - BE129171 - - resembles invertebrate ssr alpha subunit | - - 1917;1 - -" 894020a09 "- - BE129083 - - - | - - 2746;2 - -" 894021c11 "- - BE129058 - - - | - - 2214;2 20021010.6138.2_go blastx [GO:0007601 vision evidence=TAS] SPTR:O00294 symbol:TUL1_HUMAN Tubby related protein 1 49.4 1178 85 3.0e-14 188 [CH on 20030713 @ 110]" 894021e11 "- - - - - - | - - 4130;2 - -" 894021a03 - - BE129013 - - mitochondrial uncoupling protein | - - - - - 894022h07 "- - BE129387 - - - | - - 8426;1 - -" 894022h11 "- - BE129395 - - eukaryotic initiation factor 3h1 subunit | - - 3330;1 - -" 894023a07 "- - BE129409 - - putative atp binding protein | - - 1511;2 - -" 894023f07 "- - BE129502 - - nadh dehydrogenase (ubiquinone) fe-s protein | - - 3875;1 20021010.7806.1_go blastx SPTR:Q9N4L8 symbol:ZK973.[GO:0007345 embryogenesis and morphogenesis evidence=IMP] [GO:0002119 larval development (sensu Nematoda) evidence=IMP] [GO:" 894023h01 "- - BE129526 - - lytb protein | - - 5832;1 - -" 894023a02 "- - BE129400 - - - | - - 4296;2 - -" 894023c03 "- - BE129441 - - possibly nadh dehydrogenase subunit 7 | - - 7633;1 - -" 894023h05 "- - BE129534 - - porin-like protein (voltage-dependent anion channel protein) | - - 7728;1 - -" 894021e04 "- - BE129080 - - - | - - 939;1 - -" 894001b06 "- - - - - - | - - 5755;1 - -" 894001e09 - - BE024217 - - possibly 40s ribosomal protein s6 | - - - - - 894001c05 "- Unknown BE024172 - Unknown - | - none 2388;2 - -" 894001c12 - - - - - - | - - - - - 894002d02 "- Unknown, some similarity to hydroxyproline rich protein BE024342 - Unknown, some similarity to hydroxyproline rich protein - | - 8954 6881;1 - -" 894002c07 "PETO cyochrome b6f subunit V BE024330 - cyochrome b6f subunit V cytochrome b6/f associated phosphoprotein peto (af222893) | - 5888 1177;1 - -" 894003c04 "- - BE024483 - - - | - - 834;1 - -" 894003e12 "- Unknown BE024539 - Unknown - | - 1723 7360;1 - -" 894003g05 - - BE024567 - - - | - - - - - 894003h10 - - BE024595 - - - | - - - - - 894003e01 "- - BE024521 - - tryptophan synthase beta subunit; confirmed, matches (af047024) | - - 2722;2 20021010.3954.1_go blastx [GO:0004834 tryptophan synthase activity evidence=IDA;ISS] [GO:0000162 tryptophan biosynthesis evidence=TAS;IMP] [GO:0005737 cyto" 894004h03 "- - BE024666 - - (nc_003076) putative protein | - - 3180;2 - -" 894004h12 - - - - - - | - - - - - 894005h05 "- - - - - - | - - 2891;1 Putative 3-isopropylmalate dehydratase [Arabidopsis] {3e-62} [AG/ZD on 20030501 @ 9207]" 894005e04 - - - - - - | - - - - - 894005b07 "- - - - - - | - - 7149;1 - -" 894006g02 "- PAF1 (proteasome alpha 6 subunit) BE024890 - PAF1 (proteasome alpha 6 subunit) 20s proteasome subunit paf2 | - 5487 6310;1 20021010.5487.1_go blastx [GO:0003723 RNA binding activity evidence=TAS] [GO:0005634 nucleus evidence=TAS] [GO:0005837 26S" 894006e09 "- - BE024860 - - 60s ribosomal protein l2 | - - 1493;1 20021010.8836.2_go blastx SPTR:Q9XVF7 symbol:rpl-[GO:0007345 embryogenesis and morphogenesis evidence=IMP] [GO:0000003 reproduction evidence=IMP] SPTR:Q9XVF7 symbol:rpl-2 71.1 1102 253 1.0e-105 9" 894006g07 "- - BE024900 - - - | - - 660;1 - -" 894006e05 "PSBP1 OEE2, oxygen evolution enhancer 2 BE024853 C_880018 OEE2, oxygen evolution enhancer 2 oee2; confirmed, matches (m15187) | - 7935 409;1 - -" 894006f02 "- - BE024870 - - glutathione s-transferase | - - 2659;1 - -" 894006c08 "GBP1P G-strand binding protein BE024814 - G-strand binding protein g-strand binding protein gbp1p; confirmed, matches (u10442) | - 7660 3889;1 G-strand binding protein Gbp1p [AG/ZD on 20030501 @ 9138]" 894006h11 "- - BE024930 - - - | - - 3292;1 - -" 894005h06 "- - - - - - | - - 110;1 - -" 894008c08 "- - BE025133 - - plastid division protein ftsz1 | - - 5077;1 - -" 894008e05 "- - BE025168 - - possible proline/betaine transporter | - - 4613;1 - -" 894008g05 "- - BE025206 - - similar to synechocystis d90912 | - - 6078;2 - -" 894008c07 "- - BE025131 - - nadh dehydrogenase 10.5 kda chain | - - 8054;6 20021010.4890.1_go blastx SPTR:O43678 symbol:NI8M_HUMAN NADH-[GO:0008137 NADH dehydrogenase (ubiquinone) activity evidence=TAS] [GO:0006091 energy pathways evidence=NR] [GO:0005624 mem" 894008b02 "GLPV glycogen/starch phosphorylase BE025105 - glycogen/starch phosphorylase starch phosphorylase | - 7333 2697;2 - -" 894009d09 "- - BE056445 - - seryl-trna synthetase | - - 4682;2 20021010.8784.1_go blastx SPTR:O14018 symbol:SPAC29A4.15 SPAC29A4.[GO:0006400 tRNA modification evidence=ISS] [GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and derivative " 894010f03 "- - BE056631 - - gtp-binding protein ypt5; confirmed, matches (u13170) | - - 4985;1 20021010.6142.1_go blastx SPTR:P51149 symbol:RAB7_HUMAN Ras-related protein Rab-7 Ras-related protein Rab-[GO:0003928 RAB small monomeric GTPase activity evidence=TAS]" 894010a07 "- Unknown BE056534 - Unknown - | - 774 991;1 - -" 894011b08 "- - - - - - | - - 4783;1 - -" 894011a05 "- - BE056691 - - dead box rna helicase? but .3 doesn+t match; compare (aj298232) soluble inorganic pyrophosphatase | - - 7930;2 20021010.9512.1_go blastx [GO:0006403 RNA localization evidence=ISS] [GO:0006371 mRNA splicing evidence=ISS] [GO:0006397 " 894011g06 "- - BE056798 - - adp-ribosylation factor?; similar but not identical to (u27120) | - - 1132;1 20021010.8044.1_go blastx [GO:0007186 G-protein coupled receptor protein signaling pathway evidence=ISS] [GO:0009117 nucleotide metabolism evidence=ISS] [GO" 894011g11 "- - BE056808 - - t-complex protein 1 (tcp1), beta subunit | - - 7813;2 20021010.6524.1_go blastx SPTR:P78371 symbol:TCPB_HUMAN T-complex protein 1,[GO:0003754 chaperone activity evidence=NR] [GO:0000074 regulation of cell cycle evidence=TAS] [GO:000" 894012d09 "- - BE121489 - - geranylgeranyl hydrogenase | - - 6390;1 - -" 894013a11 "- - BE121547 - - - | - - 6288;1 - -" 894013e01 "- - BE121593 - - - | - - 2379;1 - -" 894013h09 "- - BE121647 - - - | - - 3162;1 - -" 894014a05 "PSAH. Photosystem I subunit H BE121659 - Photosystem I subunit H psah; photosystem i 11 kda subunit vi protein? 90% but not perfect match to (x15164) | - 6118 6609;2 - -" 894016f06 "- - BE122012 - - not superoxide dismutase. x read has no obvious match to any sequenced chlamy gene; y read has about 62% nucleotide identity both to mn superoxide dismutase (u24500) and to gamma subunit of outer arm dynein (u15303) | - - 6867;3 20021010" 894016c12 "- - - - - - | - - 5379;1 - -" 894016a05 "- - BE121918 - - 40s ribosomal protein sa (p40) | - - 4762;1 20021010.5956.1_go blastx [GO:0005055 laminin receptor activity evidence=TAS] [GO:0006445 regulation of translation evidence=NR] [GO:0007048 oncogenesis evidence=NR] [GO:0007125 invasive" 894016e02 "- - BE121985 - - putative multispanning membrane protein, similar to arabidopsis f10b6.3 | - - 2325;1 20021010.6546.3_go blastx [GO:0005624 membrane fraction evidence=NR] [GO:0016021 integral to membrane evidence=TAS] SPTR:O15321 symbol:T9S1_HUMAN T" 894016f07 - - BE122014 - - - | - - - - - 894016g01 "- - BE122025 - - gamete-specific hydroxyproline-rich glycoprotein a3; confirmed, matches (af309495) | - - 6012;2 - -" 894013h01 "- Unknown BE121633 - Unknown - | - 585 5264;2 Putative expressed protein [At1g65900.1,Arabidopsis] {2e-20} [+ Fe-ABC transporter, 1e-04] [AG/ZD on 20030501 @ 9149]" 894003e02 "- - BE024523 - - - | - - 7364;2 - -" 894003e08 "- - BE024532 - - - | - - 5949;1 - -" 894004d04 - - BE024626 - - - | - - - - - 894004c08 "- - BE024622 - - - | - - 4871;1 - -" 894004d06 "- - BE024628 - - similar to an unidentified arabidopsis protein (ay050336) at4g27700/t29a15_190 | - - 1608;1 - -" 894004d12 - - BE024633 - - - | - - - - - 894006d02 "GLN2 chloroplast glutamine synthetase) BE024825 - chloroplast glutamine synthetase) glutamine synthetase gs2 (chloroplast); confirmed, matches (u46208) | - 6255 1145;1 20021010.6255.1_go blastx [GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and derivative metabolism evidence=ISS] [GO:0006536 glutamate metabolism evidence=ISS] SPTR:Q09179 symbol:GLN1 GLN1 49.0 1596 347 2.0e-87 821 [CH on 20030713 @ 68]" 894007b08 "- - BE024961 - - - | - - 1807;1 - -" 894007f05 "- - BE025041 - - - | - - 7077;2 - -" 894007d11 "- - BE025009 - - initiation factor eif-1a? conflicting blast results on contig | - - 2079;1 20021010.9227.1_go blastx SPTR:P47813 symbol:IF1X_HUMAN Eukaryotic translation initiation factor 1A, X-[GO:0006413 translational initiation evidence=TAS] [GO:0" 894008e03 "- - BE025164 - - possibly u1 small nuclear ribonucleoprotein 70 kda | - - 413;1 - -" 894009f01 "- - BE056465 - - - | - - 6259;1 - -" 894014c01 "- - BE121681 - - - | - - 3701;1 - -" 894015h04 - - BE121897 - - - | - - - - - 894016h12 "- - BE122067 - - casein kinase | - - 6726;2 - -" 894016b08 "- - BE121939 - - - | - - 4847;1 - -" 894017f02 "- - BE122138 - - possibly 40s ribosomal protein s13 | - - 7432;2 20021010.6274.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0" 894018h03 "- - BE122292 - - flagellar radial spoke protein 6 (rsp6); confirmed, matches (m87526) | - - 5568;2 - -" 894018e05 - - BE122252 - - prli-interacting factor l | - - - - - 894018h08 "- Unknown BE122300 - Unknown - | - 8131 4879;1 - -" 894019h06 "- - BE122420 - - possible rna-binding protein | - - 5365;1 - -" 894019c08 "RPL15 RPL15 BE122341 - RPL15 60s ribosomal protein l15 | - 7238 5457;1 20021010.7238.1_go blastx SPTR:P54780 symbol:RPL15B ribosomal protein L15B (YL10) (L13B) (rp15R)[GO:0006412 protein biosynthesis evidence=TAS] [GO:0003723 RNA binding activity evidence=IDA] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0005842 cytosolic large ribosomal subunit (sensu Eukarya) evidence=TAS] SPTR:P54780 symbol:RPL15B ribosomal protein L15B (YL10) (L13B) (rp15R) 68.2 740 192 1.0e-71 680 [CH on 20030713 @ 106]" 894019b05 "- - BE122322 - - similar to a psii 11 kda protein from synechocystis, also arabidopsis f21b7.14 | - - 3015;1 - -" 894014g04 - Unknown BE121753 - Unknown - | - 8218 - - - 894007g05 - - BE025059 - - - | - - - - - 894008f04 - - BE025189 - - similar to an unknown arabidopsis protein (ay045831) | - - - - - 894008f12 "- - BE025200 - - 40s ribosomal protein s14? very similar, but not quite identical to (u06937) nucleotide sequence | - - 3772;1 20021010.2119.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0" 894008h12 "- - - - - - | - - 1515;1 - -" 894008f05 "- Unknown - - Unknown - | - 4927 5558;1 - -" 894008b10 "- - BE025116 - - - | - - 3500;2 - -" 894009a07 - - BE056384 - - - | - - - - - 894009e11 - - BE056462 - - conflicting blast results | - - - - - 894010b12 - - BE056562 - - serine hydroxymethyltransferase | - - - 20021010.62.1_go blastx SPTR:P34897 symbol:GLYM_HUMAN Serine hydroxymethyltransferase,[GO:0005739 mitochondrion evidence=TAS] SPTR:P34897 symbol:GLYM_HUMAN Serine hydroxymethyltransferase, mito 894010b10 "- - BE056559 - - uroporphyrinogen decarboxylase | - - 3095;1 - -" 894010a04 "- - BE056528 - - - | - - 335;1 - -" 894011f02 "- - BE056772 - - - | - - 1382;2 - -" 894011d03 "- - BE056740 - - dynein outer arm 14 kda light chain lc5 (u43609); 92% nucleotide identity, y read is better match | - - 1267;1 - -" 894012b03 "- - BE121459 - - possibly phosphoglycerate kinase | - - 5247;2 - -" 894012c09 - - BE121477 - - - | - - - - - 894012b04 - - BE121461 - - - | - - - - - 894012f08 "- - BE121509 - - ubiquitin-activating enzyme e1 2 | - - 2031;2 20021010.9109.3_go blastx SPTR:P22314 symbol:UBA1_HUMAN Ubiquitin-[GO:0004839 ubiquitin activating enzyme activity evidence=NR] [GO:0006260 DNA replication evidence=NR] SPTR:P22314 symbo" 894014f12 "RBS3 RBS30 BE121746 - RBS30 40s ribosomal protein s30 | - 4106 3237;1 20021010.4106.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0005829 cytosol evidence=ISS] [GO:0016282 eukaryotic 43S pre-initiation complex evidence=ISS] [GO:0005737 cytoplasm evidence=ISS] [GO:0005830 cytosolic ribosome (sensu Eukarya) evidence=ISS] SPTR:O42952 symbol:RPS3001 RPS3001 70.7 560 58 6.0e-16 198 [CH on 20030713 @ 92]" 894014e01 "- - BE121719 - - - | - - 5684;1 - -" 894014b04 "- UBC2, ubiquitin-conjugating enzyme E2 BE121672 - UBC2, ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme e2 | - 5527 4697;1 20021010.5527.1_go blastx [GO:0006508 proteolysis and peptidolysis evidence=ISS] [GO:0019538 protein metabolism " 894015e09 "- - BE121859 - - possibly 60s ribosomal protein l10 | - - 389;1 - -" 894015d09 "- - BE121841 - - - | - - 912;1 - -" 894015d12 "- - BE121846 - - possibly 40s ribosomal protein s4 | - - 160;1 Putative CG10841 gene product [Drosophila] {6e-09} [AG/ZD on 20030501 @ 9211]" 894010b06 "- - BE056552 - - probably chloroplast elongation factor ef-g | - - 1981;1 - -" 894001b08 "- - BE024155 - - - | - - 971;2 - -" 894001f03 - - BE024228 - - - | - - - - - 894001h09 "- - BE024276 - - aaa-type atpase (arabidopsis) or vacuolar sorting protein 4 (yeast) | - - 5179;1 20021010.2383.1_go blastx [GO:0008573 peroxisome-assembly ATPase activity evidence=TAS] [GO:0006355 regulation of transcription, DNA-dependent evidence=" 894001g07 "- - BE024254 - - delta 9 desaturase | - - 7455;2 - -" 894002d04 "- - BE024346 - - - | - - 7302;1 - -" 894003d08 "- - BE024511 - - resembles an unidentified arabidopsis protein, also yeast killer toxin resistant; kre33p | - - - 20021010.2491.2_go blastx [GO:0005554 molecular_function unknown evidence=ND] [GO:0000004 biological_process unknown evidence=ND] [GO:00" 894006e01 "- - BE024845 - - zinc finger protein glo3-like | - - 3421;1 20021010.4746.1_go blastx SPTR:P38682 symbol:GLO3 similar to Gcs1p and Sps18p,[GO:0005793 ER-Golgi intermediate compartment evidence=IPI] [GO:0006888 ER to Golgi transport evidence=IGI;IMP]" 894006h07 "- CHLRE_650068, microtubule-associated protein BE024923 - CHLRE_650068, microtubule-associated protein microtubule-associated protein | - 82 4;1 20021010.82.1_go blastx SPTR:O94272 symbol:SPBP8B7.24C SPBP8B7.[GO:0007151 sporulation (sensu Saccharomyces" 894006a01 "- - BE024762 - - - | - - 7401;1 - -" 894006g01 - Unknown BE024889 - Unknown - | - none - - - 894006g06 "- - BE024898 - - glyoxalase i | - - 5905;1 20021010.2178.1_go blastx [GO:0004462 lactoylglutathione lyase activity evidence=TAS] [GO:0005975 carbohydrate metabolism evidence=NR] SPTR:Q04760 symbol:LGUL_HUMAN Lactoylglutathione lyase 67.8 1328 171 9" 894010e07 "- - BE056617 - - similar to mammalian sedlin protein | - - 5367;1 20021010.4714.1_go blastx [GO:0001501 skeletal development evidence=TAS] [GO:0006888 ER to Golgi transport evidence=TAS] [GO:0006899 nonselective vesicle transport evidence=TAS] SPTR" 894010d07 - - BE056595 - - - | - - - - - 894010h06 - - BE056678 - - kinesin-like protein | - - - - - 894011d02 - - BE056738 - - atp-dependent protease (cd4a) | - - - 20021010.857.2_go blastx SPTR:O74402 symbol:SPBC4F6.17C SPBC4F6.[GO:0006457 protein folding evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0005739 mitochondrion evidence=ISS] S 894011h10 "- - BE056819 - - - | - - 3700;1 - -" 894012a04 - - BE121448 - - - | - - - - - 894017f08 "RBS27 RBS27 BE122147 - RBS27 40s ribosomal protein s27; confirmed, matches (x83694) | - 5393 3634;1 20021010.5393.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0005829 cytosol evidence=ISS] [GO:0016282 eukaryotic 43S pre-initiation complex evidence=ISS] [GO:0005737 cytoplasm evidence=ISS] [GO:0005830 cytosolic ribosome (sensu Eukarya) evidence=ISS] SPTR:O74330 symbol:RPS27 RPS27 75.3 613 85 7.0e-32 336 [CH on 20030713 @ 103]" 894017b01 - - BE122083 - - - | - - - - - 894017c12 - - BE122104 - - - | - - - 20021010.3793.1_go blastx SPTR:Q22551 symbol:grd-[GO:0007345 embryogenesis and morphogenesis evidence=IMP] SPTR:Q22551 symbol:grd-6 45.5 572 55 2.3e-02 81 [CH on 20030713 @ 101] 894017h12 "- - BE122181 - - similar to an unidentified cyanobacterial protein (ap003588) | - - 3638;1 - -" 894018g08 "- Unknown BE122285 - Unknown - | - 564 1349;1 - -" 894018b08 "CLPP4 clp protease active subunit of chloroplast ClpP complex BE122208 C_370132 - atp-dependent clp protease proteolytic subunit | - - 5450;1 20021010.9283.1_go blastx SPTR:O88696 symbol:CLPP_MOUSE Putative ATP-dependent Clp protease proteolytic subunit,[GO:0005739 mitochondrion evidence=IDA] SPTR:O88696 symbol:CLPP_MOUSE Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor 51.6 1717 186 8.0e-45 453 [CH on 20030713 @ 104]" 894006c06 "- - BE024810 - - similar to an unidentified arabidopsis protein ((nc_003074, nc_003075) | - - 7123;1 - -" 894018c10 - - BE122229 - - chloroplast ribosomal protein l17 | - - - - - 894018b07 "ATPVE vacuolar ATPase chain E BE122206 C_1110009 vacuolar ATPase chain E vacuolar atp synthase subunit e | - 4771 2030;1 - -" 894018b11 "- - BE122212 - - - | - - 5495;2 - -" 894018a04 "- Unknown BE122186 - Unknown - | - 9574 4108;1 - -" 894018e08 "- - - - - - | - - 8281;2 20021010.4127.1_go blastx SPTR:P40926 symbol:MDHM_HUMAN Malate dehydrogenase,[GO:0030060 L-malate dehydrogenase activity evidence=NAS] [GO:0000004 biological_process unknown evidence=ND] [GO:0005759 mitochondrial matrix ev" 894020g06 "- - BE128985 - - - | - - 5254;1 - -" 894020f07 "- - BE128970 - - individual blast searches on other ests in this group suggest rieske iron-sulfur protein (petc), but the contig 20011023.1271.2 doesn+t appear to have given a good match | - - 2892;2 - -" 894020b10 "- - BE129100 - - - | - - 4057;1 - -" 894020d03 "- - BE129131 - - - | - - 7253;1 - -" 894021b01 "ATPD ATP synthase delta chain BE129031 C_1610012 ATP synthase delta chain atp synthase cf1 delta subunit (atpd); confirmed, (u41442) | - 6167 6405;1 - -" 894021h09 "- - BE129239 - - chloroplast protein cp12 | - - 7323;1 - -" 894022e12 "- - BE129337 - - - | - - 8320;1 - -" 894022c11 "- - BE129293 - - mitochondrial matrix protein mmc1; confirmed, matches (y11586) | - - 3126;2 - -" 894022c01 "- - BE129277 - - - | - - 2471;2 - -" 894022d07 "- - BE129309 - - - | - - 8283;1 - -" 894022a09 "- - BE129252 - - - | - - 2672;1 - -" 894022d02 "- - BE129299 - - - | - - 3420;1 - -" 894024g11 "- - BE211939 - - no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - - 2198;1 - -" 894024d03 "- - BE211895 - - possibly asparagine synthetase | - - 3306;1 - -" 894024g05 "- - BE211931 - - - | - - 5016;4 - -" 894024c09 "- - BE211892 - - - | - - 6333;1 - -" 894024h08 "- - BE211955 - - - | - - 5225;2 - -" 894018f12 "- - BE122275 - - - | - - 6430;1 - -" 894002h08 - - BE024433 - - - | - - - - - 894002f03 "- - - - - - | - - 5890;4 - -" 894002g04 "- Unknown BE024404 - Unknown transaldolase | - 1806 3489;1 - -" 894002h10 "- - BE024437 - - - | - - 7407;3 - -" 894003a08 - - BE024452 - - - | - - - - - 894004a10 - - BE024606 - - - | - - - - - 894004b06 "- - BE024611 - - probable mitochondrial uncoupling protein | - - 5967;1 - -" 894004f11 "- - BE024651 - - - | - - 896;1 - -" 894004g08 - - BE024659 - - - | - - - - - 894004a12 "- - BE024608 - - - | - - 7907;1 - -" 894004c11 "- - BE024624 - - - | - - 6965;2 - -" 894006e04 "- Unknown BE024851 - Unknown - | - 5989 7559;1 - -" 894006f12 "- - - - - - | - - 7845;1 - -" 894006a05 "- - BE024767 - - protein phosphatase type-2c | - - 5609;2 - -" 894006a12 - - BE024780 - - - | - - - - - 894006c04 "- - BE024806 - - - | - - 3268;1 - -" 894006d11 "- - BE024841 - - - | - - 7884;1 - -" 894007c09 "- - BE024985 - - - | - - 3315;1 - -" 894007h11 "- - - - - - | - - 6191;1 - -" 894007b03 "- - BE024952 - - - | - - 1093;2 - -" 894007b12 "- - BE024968 - - probably a protein kinase | - - 7187;1 - -" 894007c06 "- - BE024979 - - - | - - 2439;2 - -" 894007d05 "- - BE025000 - - cytochrome b5 | - - 3081;1 - -" 894002g06 "- - BE024408 - - nadh-ubiquinone oxidoreductase 22kda subunit | - - 1930;1 20021010.9248.1_go blastx SPTR:O75251 symbol:NUKM_HUMAN NADH-ubiquinone oxidoreductase 20 kDa subunit,[GO:0006120 oxidative phosphorylation, NADH to ubiquinone evidence=NAS] [G" 894016f10 "- - BE122019 - - - | - - 4031;1 - -" 894017a12 "- - BE122081 - - chloroplast elongation factor ef-g | - - 6808;1 - -" 894017g12 "- - BE122166 - - - | - - 6455;1 - -" 894017b02 "- - BE122085 - - - | - - 3308;1 - -" 894017d04 "- - BE122110 - - - | - - 4060;1 - -" 894019e07 "PSAO Photosystem I subunit O BE122372 C_6110002 Photosystem I subunit O similar to an unidentified arabidopsis protein (nc_003070) | - 683 3431;1 Putative 16KD membrane protein [Nicotiana tabacum] {3e-20} [AG/ZD on 20030501 @ 9205]" 894019f02 "- - BE122382 - - - | - - 7949;3 - -" 894020e01 "- Unknown - - Unknown - | - 2916 5036;2 - -" 894020c07 "- - BE129115 - - probable hydroxyproline-rich glycoprotein | - - 255;1 - -" 894020e02 "- - - - - - | - - 5634;1 - -" 894020d02 "- - BE129129 - - - | - - 3462;1 - -" 894021g05 "- - BE129212 - - - | - - 3285;1 - -" 894021h01 "- - BE129225 - - similar to an arabidopsis hypersensitivity-induced protein | - - 6375;1 - -" 894021c10 "- - BE129056 - - - | - - 1066;1 - -" 894021f05 "- - BE129195 - - - | - - 4800;2 - -" 894022h10 "- - BE129393 - - conflict: glutathione s-transferase or prostaglandin-d synthase | - - 3380;1 - -" 894022f12 "- - - - - - | - - 7355;2 - -" 894023b04 "- - BE129426 - - - | - - 5110;1 20021010.8147.1_go blastx SPTR:Q16881 symbol:TRXB_HUMAN Thioredoxin reductase,[GO:0004791 thioredoxin reductase (NADPH) activity evidence=TAS] [GO:0007165 signal transduction evidence=NR] SPTR:Q16881 symbol:TRXB_HUMAN" 894023c09 "- - BE129452 - - - | - - 1704;3 - -" 894023a06 "- - BE129407 - - - | - - 1052;2 - -" 894023h12 "- - BE129546 - - - | - - 3887;1 - -" 894023h02 "- - BE129528 - - - | - - 3165;1 - -" 894023g06 "- - BE129518 - - branched-chain amino acid transaminase | - - 2020;2 - -" 894017c04 "- - BE122095 - - chlamyopsin 2; confirmed matches (af295371); also very high match to chlamyopsin (aj132984) (z48968) | - - 6686;1 - -" 894001d05 "- - BE024189 - - - | - - 6038;1 - -" 894001h07 "- Unknown, Putativel protein in petA-petD intergenic region BE024272 - Unknown, Putativel protein in petA-petD intergenic region - | - 8584 2977;1 - -" 894001e02 "- - BE024206 - - prt1 protein | - - 4349;2 - -" 894001h03 "- - BE024265 - - - | - - 6994;1 - -" 894002c10 "- - BE024336 - - 40s ribosomal protein s26 | - - 2745;1 20021010.6938.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0005829 c" 894002d05 "- - BE024348 - - maybe (aj344366) striated fiber assemblin | - - 4304;1 - -" 894003c12 "- - BE024498 - - - | - - 4456;1 - -" 894003g02 - - BE024562 - - recheck: maybe mixed group | - - - - - 894003g06 "DEGP15 (PARTIAL) serine protease, trypsin family, DegP type BE024569 C_1010043 serine protease, trypsin family, DegP type similr to xenopus rcc1 protein | - - 2124;1 - -" 894003f02 "- - BE024542 - - - | - - 3679;2 - -" 894004c10 "- - BE024623 - - - | - - 7635;1 - -" 894004c06 "- - BE024621 - - magnesium chelatase chli subunit (af343974) | - - 6035;2 - -" 894005h07 "- - - - - - | - - 2506;2 - -" 894005g04 - Unknown - - Unknown - | - none - - - 894005e10 "- Unknown - - Unknown - | - none 4836;1 - -" 894005a06 "- Chloroplast peptidyl-prolyl cis-trans isomerase - - Chloroplast peptidyl-prolyl cis-trans isomerase - | - 2563 6065;1 - -" 894006g10 "RBS17 RBS17 BE024906 - RBS17 40s ribosomal protein s17 | - none 1060;1 - -" 894006f01 "- SKS1-like protein kinase BE024868 - SKS1-like protein kinase protein kinase sks1 (u36196) ? - sequence is 95% identical | - none 6285;2 - -" 894006f11 "- - - - - - | - - 822;1 - -" 894006h03 - - BE024915 - - - | - - - - - 894006c03 "- - BE024804 - - - | - - 5305;2 - -" 894006e07 "- - BE024856 - - strong similarity (88%) to poly(a) binding protein rb47, but definitely not identical | - - 1104;1 - -" 894006c05 "- - BE024808 - - - | - - 718;2 - -" 894006e10 "- - BE024862 - - - | - - 2332;1 - -" 894026h06 "CLPR4 clp protease inactive subunit of chloroplast ClpP complex BE211991 C_120194 - atp-dependent clp protease proteolytic subunit | - - 4239;1 - -" 894026b04 "- - BE211787 - - - | - - 963;1 - -" 894026h11 "- - BE212001 - - - | - - 7710;1 - -" 894027d04 "- - BE212057 - - - | - - 3475;1 - -" 894027g01 "- - BE212111 - - - | - - 7578;1 - -" 894027h05 "- - BE212135 - - - | - - 6843;1 - -" 894028f02 "- - BE212238 - - - | - - 3962;1 - -" 894028e01 "- - BE212217 - - - | - - 8548;3 - -" 894028h01 "- Unknown, similarity to halapx protein BE212274 - Unknown, similarity to halapx protein - | - 6554 3761;1 Thioredoxin Ch2 * [AG/ZD on 20030501 @ 9188]" 894028h03 "- - - - - - | - - 1684;1 - -" 894028g01 "- Unknown BE212255 - Unknown similar to arabidopsis (ay058894) at3g61320/t20k12_220 | - 4590 404;2 - -" 894029e06 "- - BE212364 - - - | - - 3811;1 - -" 894031b01 "- - BE227381 - - rcd1 protein (s. pombe/arab.), some other names | - - 5527;1 20021010.1596.1_go blastx [GO:0007548 sex differentiation evidence=TAS] SPTR:Q92600 symbol:Q92600 Protein involved in sexual development Protein involved in sexual developme" 894031c04 "- - BE227393 - - - | - - 4717;1 - -" 894032e07 "- - BE227482 - - enoyl-acp-reductase | - - 1957;2 - -" 894032b12 "- - BE227457 - - - | - - 3082;1 - -" 894032d08 "- Unknown BE227476 - Unknown - | - 3335 2022;1 - -" 894032h08 "- - BE227513 - - - | - - 67;1 - -" 894033h07 "- - - - - - | - - 2789;1 - -" 894033f06 "- - BE227604 - - - | - - 3416;1 - -" 894034c02 "- - BE227676 - - similar to mouse kin17, homolog found in arabidopsis (ay039912) but not named | - - 2395;2 20021010.2528.2_go blastx SPTR:Q9XWF2 symbol:Y52B11A.[GO:0040032 body morphogenesis (sensu Nematoda) evidence=IMP] [GO:0007345 embryogenesis an" 894034d03 "- - BE227691 - - - | - - 685;1 - -" 894034g01 "- - BE227725 - - - | - - 6087;1 - -" 894034f05 "- - BE227716 - - similar to an unkown arabidopsis protein (nc_003070) | - - 2733;2 - -" 894044c01 - - BE337151 - - - | - - - - - 894044a06 "- - - - - - | - - 3474;2 - -" 894047a10 "- - BE337587 - - - | - - 4721;2 - -" 894047g09 "- Unknown, weak similarities to cyclic nucleotide PDE, hsp70 BE337694 - Unknown, weak similarities to cyclic nucleotide PDE, hsp70 - | - 2931 5113;1 - -" 894049h12 "- - BE351680 - - chloroplast ribosomal protein s1? no significant blastn match to chlamy or other volvocales | - - 4356;1 - -" 894049b04 "- - BE351622 - - mitogen-activated protein kinase; confirmed, matches (ab035141) | - - - - -" 894052g06 "- - BE351871 - - possibly carboxyphosphonoenolpyruvate mutase | - - 4109;2 - -" 894052g11 "- - BE351875 - - - | - - 5271;1 - -" 894052a12 - - BE351824 - - - | - - - - - 894053h12 "- Unknown BE351965 - Unknown - | - 2707 3351;2 - -" 894053e01 "- - BE351926 - - acetyl coa carboxylase | - - 6935;1 20021010.811.1_go blastx SPTR:P05165 symbol:PCCA_HUMAN Propionyl-CoA carboxylase alpha chain,[GO:0004658 propionyl-CoA carboxylase activity evidence=TAS] [GO:0009374 biotin binding activity eviden" 894053f10 - - BE351943 - - - | - - - - - 894055b10 - - BE352056 - - - | - - - - - 894056c11 "TUB1 beta tubulin 1 BE352141 - beta tubulin 1 beta-1 tubulin; confirmed, matches (m10064) | - none - Tubulin beta-1/beta-2 chain** [AG/ZD on 20030501 @ 9182]" 894056c07 - - BE352138 - - - | - - - - - 894057c08 - - BE352201 - - roughly 70% nucleotide sequence identity to several known chlamy genes, but no perfect match | - - - - - 894057e08 "- Unknown BE352219 - Unknown - | - none 7514;2 - -" 894058g08 - - BE352278 - - - | - - - - - 894063a11 "- - BE452337 - - hesb-like protein | - - 4946;2 - -" 894063h05 "- - BE452584 - - glutaredoxin | - - 6787;1 - -" 894064g06 "- - BE452488 - - blastx suggested outer-arm dynein mr78,000 intermediate chain subunit (oda9), but nucleotide sequence doesn't match any known volvocales gene | - - 7888;1 - -" 894064h06 "- - BE452509 - - similar to rice (ac087851) putative angio-associated migratory cell protein | - - 1897;2 - -" 894064g09 "- - BE452494 - - - | - - 6575;1 - -" 894064h10 "- - BE452516 - - - | - - 1150;2 - -" 894019d06 "- - BE122355 - - - | - - 2004;2 - -" 894020c03 "- - BE129107 - - - | - - 7951;1 - -" 894020e07 "- - BE129157 - - - | - - 5187;1 - -" 894021g03 - - BE129208 - - glycolate oxidase | - - - - - 894022g11 "- - BE129372 - - protein disulfide-isomerase, chloroplast; confirmed, matches (af036939) | - - 2947;1 - -" 894022g07 "ATPVL1 vacuolar ATPase proteolipid subunit BE129365 C_200106 vacuolar ATPase proteolipid subunit no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - 6114 4523;3 - -" 894024g07 "- - BE211934 - - - | - - 1406;1 20021010.4264.1_go blastx [GO:0008285 negative regulation of cell proliferation evidence=TAS] SPTR:O95995 symbol:O95995 Growth arrest specific 11 Growth arrest specific 11 55.8 1820 199 7.0e-58 566 [CH on 20030713 @ 11" 894024f10 "- - BE211923 - - 14-3-3 protein; confirmed, matches(y19105) | - - 932;1 20021010.322.1_go blastx SPTR:P92177 symbol:143E_DROME 14-3-[GO:0000077 DNA damage checkpoint evidence=IMP] [GO:0007088 regulation of mitosis evidence=IMP] SPTR:P92177 symbol:14" 894025c11 "- - BE211971 - - sim to worm unc-119 | - - 6733;1 - -" 894026h07 "- - BE211993 - - dihydrodipicolinate synthase | - - 4079;2 - -" 894026f11 "- - BE211866 - - 2-oxoglutarate dehydrogenase | - - 1438;1 20021010.2370.2_go blastx SPTR:Q02218 symbol:ODO1_HUMAN 2-oxoglutarate dehydrogenase E1 component,[GO:0006091 energy pathways evidence=TAS] [GO:0009353 oxoglutarate dehydrogenase complex (sen" 894027a08 - ATP dependent helicase BE212016 - ATP dependent helicase helicase | - none - 20021010.1795.1_go blastx SPTR:P38935 symbol:SMB2_HUMAN DNA-binding protein SMUBP-[GO:0003678 DNA helicase activity evidence=TAS] [GO:0003697 single-stranded DNA binding 894031d05 "- Unknown BE227402 - Unknown - | - 7633 4445;1 - -" 894031g02 - - BE227419 - - - | - - - - - 894032a10 "- - BE227444 - - - | - - 2006;1 - -" 894032d05 "- - BE227473 - - putative u5 small nuclear ribonucleoprotein, an rna helicase | - - 3546;2 20021010.6181.2_go blastx [GO:0004004 ATP dependent RNA helicase activity evidence=TAS] [GO:0008248 pre-mRNA splicing factor activity evidence=TAS] [GO:0006371" 894032d09 "- - BE227478 - - nuclear transport factor 2 | - - 7749;1 - -" 894033c03 "- - BE227550 - - - | - - 8382;1 - -" 894037b05 "- - BE237651 - - gtp-binding protein ran1 | - - 7127;1 - -" 894037c03 "RPSCL13 RPSCL13 BE237664 - RPSCL13 chloroplast ribosomal protein s13 | - 9418 3851;1 - -" 894038f08 "HCF136 PS II stability/assembly factor BE237864 - PS II stability/assembly factor - | - 8733 7221;1 - -" 894038d09 "- - BE237821 - - x read doesn't match anything in volvocales; y read has long region of perfect identity to pf16 gene for flagellar central apparatus protein (u40057), but doesn't match over its entire length | - - 4052;1 - -" 894039b02 "- - BE237929 - - fructose-6-phosphate 2-kinase | - - 4690;5 20021010.7695.3_go blastx SPTR:P32604 symbol:FBP26 fructose-2,6-[GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity evidence=IMP] [GO:0006094 gluconeogenesis evidence=TAS] [GO:0005" 894039g11 "- - BE238043 - - - | - - 3448;1 - -" 894034h05 - - - - - - | - - - - - 894035b03 "- - BE227770 - - similar to a conserved hypothetical protein - drosophila, c. elegans, arab., yeast | - - 7575;1 20021010.3600.1_go blastx SPTR:Q9GYG4 symbol:ham-[GO:0001709 cell fate determination evidence=IMP] [GO:0045167 asymmetric protein localiza" 894035h02 - - BE227874 - - - | - - - - - 894035b04 "- - BE227772 - - hydroxyproline-rich glycoprotein, similar but not identical to gas28 (af015883) | - - 1991;4 - -" 894035b12 "- - BE227787 - - aspartate aminotransferase | - - 5720;1 20021010.6219.2_go blastx SPTR:O94320 symbol:SPBC725.01 SPBC725.[GO:0006534 cysteine metabolism evidence=ISS] [GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and deriva" 894036d03 - - BE227951 - - similar to an unidentified arabidopsis protein (ac012561) | - - - - - 894037e09 "- - BE237697 - - - | - - 1878;3 - -" 894037f03 "- Unknown BE237704 - Unknown possibly a protein kinase | - 7649 5039;1 - -" 894037g05 "- - BE237740 - - cell wall protein vsp6; confirmed, matches (af382191) | - - 6456;1 - -" 894037h03 - - BE237749 - - - | - - - - - 894037b07 "RBS25 RBS25 BE237654 - RBS25 x read has about 55% identity to (x74418), encoding sedoheptulose-bisphosphatase | - 8122 7142;1 - -" 894037c10 "- - BE237671 - - - | - - 3429;1 - -" 894038f09 "- - BE237866 - - - | - - 2680;1 - -" 894038g07 "- - BE237881 - - - | - - 4218;2 - -" 894038d07 "PFL Pyruvate formate lyase BE237818 - Pyruvate formate lyase formate acetyltransferase; confirmed, matches (x66410) | - 7098 5078;2 Formate acetyltransferase [AG/ZD on 20030501 @ 9136]" 894038e11 "CUTA1 copper-binding protein, chloroplast BE237846 - copper-binding protein, chloroplast putative gene product is similar to an arabidopsis protein that in turn is reportedly related to microbial divalent cation tolerance proteins | - 2279 1556;1 Putative copper-binding protein CUTA [Arabidopsis] {5e-30} [AG/ZD on 20030501 @ 9213]" 894038g09 "- - BE237883 - - - | - - 8265;1 - -" 894039d03 - - BE237975 - - 40s ribosomal protein s2 | - - - 20021010.698.1_go blastx [GO:0003723 RNA binding activity evidence=TAS] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0006412 protein biosynthesis evidence=TAS] [GO:0005843 cytos 894040a07 "- - BE238070 - - cdc48 - like protein | - - 5440;3 20021010.1310.2_go blastx [GO:0005515 protein binding activity evidence=IPI] SPTR:Q01853 symbol:TERA_MOUSE Transitional endoplasmic reticulum ATPase 78.8 2621 495 0.0e+00 2007 [CH on 20030713 @ 157]" 894040h03 "- - BE238212 - - - | - - 1606;1 - -" 894040c06 "- - BE238111 - - sterol-c-methyltransferase | - - 2824;3 20021010.5766.2_go blastx [GO:0007049 cell cycle evidence=ISS] [GO:0016288 cytokinesis evidence=ISS] [GO:0007067 mitosis evidence=ISS] [GO:0000087 M phase of mitotic cell cycle evidence=ISS" 894040g05 "- - BE238192 - - similar to an arabidopsis protein (nc_003076) | - - 3950;1 - -" 894040h07 "- - BE238218 - - matches (ac007789) unknown protein [oryza sativa] | - - 1760;1 - -" 894040b03 "- - BE238085 - - possibly cathepsin z | - - 6593;1 20021010.3810.1_go blastx [GO:0006508 proteolysis and peptidolysis evidence=TAS] [GO:0007048 oncogenesis evidence=TAS] [GO:0008234 cysteine-type peptidase activity evidence=TAS] SPTR:Q9UBR2 symbol:" 894022a08 "- - BE129250 - - - | - - 1148;1 - -" 894022h04 "- - BE129381 - - conflicting blast results | - - 8484;2 - -" 894023a03 "- - BE129402 - - - | - - 1047;2 - -" 894023d05 "- - - - - - | - - 1739;1 - -" 894023d03 "- - BE129460 - - - | - - 2903;1 - -" 894023f02 "- - BE129492 - - - | - - 689;1 - -" 894028c09 "- Unknown BE212196 - Unknown - | - 2208 3984;2 - -" 894028d10 "- - BE212213 - - - | - - 2315;3 - -" 894028f11 "- - BE212253 - - possibly carbonyl reductase | - - 5544;1 - -" 894028a05 "- - BE212152 - - - | - - 1422;2 - -" 894029b07 - - BE212317 - - - | - - - - - 894030b05 "- - BE227301 - - prenyltransferase | - - 4889;1 - -" 894035f11 "- Unknown BE227853 - Unknown - | - 709 6288;1 - -" 894036d12 - - BE227964 - - - | - - - - - 894036e11 - - BE227983 - - - | - - - - - 894036h11 - Unknown, similarity to carbamoyl phosphate synthetase BE228036 - Unknown, similarity to carbamoyl phosphate synthetase problem: contig 1327.1 matches (nc_003070) carbamoylphosphate synthetase, putative [arabidopsis thaliana] , 1327.2 matches (nc_00307 894037b11 "RPLCL6 RPLCL6 BE237659 - RPLCL6 chloroplast ribosomal protein l6 | - 2083 5180;1 - -" 894037g04 "- - BE237739 - - - | - - 796;1 - -" 894039d08 "- - BE237984 - - 40s ribosomal protein s15a | - - 3130;1 20021010.8662.1_go blastx SPTR:P04648 symbol:RPS22A ribosomal protein S22A (S24A) (rp50) (YS22)[GO:0006412 protein biosynthesis evidence=TAS] [GO:0003735 structural constituent of ribosome evi" 894039h08 "- - BE238055 - - casein kinase i | - - 3018;2 20021010.9541.2_go blastx [GO:0007049 cell cycle evidence=ISS] [GO:0006281 DNA repair evidence=ISS] [GO:0016288 cytokinesis evidence=ISS] [GO:0006950 response to stress evidence=ISS] [GO:0007165 sign" 894040f12 "- - BE238183 - - 60s ribosomal protein l2 | - - 3052;1 - -" 894040e11 "- Vacuolar ATP synthase, subunit A BE238161 - Vacuolar ATP synthase, subunit A vacuolar atp synthase subunit a | - 592 7045;2 20021010.592.1_go blastx SPTR:P38606 symbol:VAA1_HUMAN Vacuolar ATP synthase catalytic subunit A,[GO:0006832 small molecule " 894041h12 "- Unknown BE238337 - Unknown some similarity to a bacterial membrane protein | - none 5889;1 - -" 894036e04 - - BE227970 - - alcohol dehydrogenase, class iii | - - - - - 894036d01 - - - - - - | - - - - - 894036h05 - - BE228025 - - - | - - - - - 894037f12 "- - not added - - - | - - 5445;2 - -" 894037a11 "- - BE237644 - - initiation factor eif-2 beta subunit | - - 7093;1 20021010.7129.1_go blastx [GO:0003723 RNA binding activity evidence=TAS] [GO:0005840 ribosome evidence=NR] [GO:0005850 eukaryotic translation initiation factor 2 complex evidence=TA" 894037c06 - - BE237667 - - probably fen-1 endonuclease | - - - 20021010.500.1_go blastx SPTR:P39748 symbol:FEN1_HUMAN Flap endonuclease-[GO:0003686 DNA repair enzyme evidence=TAS] [GO:0003690 double-stranded DNA binding activity evidence=TAS] [GO:0004519 end 894037f10 "- - not added - - - | - - 7011;2 - -" 894037h11 "- - BE237727 - - - | - - 2233;1 - -" 894038c12 "- - BE237804 - - glutamine synthetase gs1 (cytosolic) | - - 3934;1 - -" 894038b12 "- - BE237786 - - - | - - 1507;1 - -" 894038c09 "- - BE237800 - - - | - - 3755;2 - -" 894038e12 "- - BE237848 - - - | - - 3188;1 - -" 894039g05 "- - BE238032 - - - | - - 1212;1 - -" 894039c12 "HDH histidinol dehydrogenase. BE237970 - histidinol dehydrogenase. histidinol dehydrogenase | - 651 5046;2 20021010.651.2_go blastx [GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and derivative metabolism evidence=ISS] [GO:0006547 histidine metabolism evidence=ISS] SPTR:Q9P777 symbol:HIS2 HIS2 62.5 747 64 4.0e-19 208 [CH on 20030713 @ 153]" 894039a03 "- - BE237914 - - translation elongation factor 3a | - - 783;1 20021010.778.1_go blastx [GO:0004009 ATP-binding cassette (ABC) transporter activity evidence=ISS] [GO:0008372 cellular_component unknown evidence=ND] [GO:0000004 biological_process unkno" 894039b11 "- - BE237946 - - malonyl-coa:acyl carrier protein transacylase | - - 6673;1 - -" 894039a02 "- - BE237912 - - - | - - 4146;1 - -" 894039f08 - - BE238019 - - - | - - - - - 894040d03 "- - BE238127 - - resembles a putative protein from arabidopsis (nc_003076) | - - 887;2 - -" 894041e06 "- - BE238288 - - - | - - 2790;2 - -" 894041e03 "- - BE238286 - - 40s ribosomal protein s3a | - - 4522;1 - -" 894041d10 "- - BE238277 - - - | - - 4478;4 - -" 894041g04 "- - BE238314 - - - | - - 1418;1 - -" 894041h03 "- - BE238328 - - similar to a mammalian steroid dehyrogenase | - - 2300;2 - -" 894041h09 "- - BE238335 - - - | - - 4282;1 - -" 894042b02 "- - BE238353 - - adenine phosphoribosyltransferase | - - 7899;1 - -" 894042f11 "- - BE238416 - - - | - - 1009;1 - -" 894042b11 "- - - - - - | - - 8379;1 - -" 894044c07 - Unknown function BE337162 - Unknown function probably aldehyde-alcohol dehydrogenase, but also some similarity to argininosuccinate synthetase | - none - - - 894044a01 "- - BE337113 - - - | - - 4012;2 - -" 894049e02 "- - BE351649 - - - | - - 4756;1 - -" 894050g07 "- Unknown BE351739 - Unknown similar to an unidentified arabidopsis protein (nc_003070) | - none 6247;1 - -" 894050g06 - - BE351738 - - recheck: maybe mixed group | - - - - - 894050c08 "- - BE351706 - - possibly initation factor 4a | - - 2622;1 - -" 894051h02 - - BE351806 - - cyanobacterial 3-oxoacyl-[acyl-carrier protein] reductase | - - - - - 894052f12 "- - BE351866 - - intraflagellar transport protein component ift52; confirmed, matches (af420244), also described as osm6-like protein, chlamy bld1 gene (af397450). ift52 or bld1 | - - 5842;2 - -" 894053g04 "- - BE351949 - - pf16 protein of flagellar central apparatus; confirmed, matches (u40057) | - - 3249;1 20021010.2331.1_go blastx SPTR:O75602 symbol:O75602 Sperm flagellar protein REPRO-SA-1 Sperm flagellar protein REPRO-SA-[GO:0007286 spermatid develop" 894054e12 "- - BE352006 - - possibly phosphoribosylformylglycinamidine cyclo-ligase | - - 5425;1 - -" 894054e04 - - BE352000 - - - | - - - - - 894055g10 "- - BE352103 - - fructose-6-phosphate 2-kinase | - - 4690;2 - -" 894055a11 - - - - - - | - - - - - 894055f04 - - BE352087 - - nadh dehydrogense subunit 5 | - - - - - 894059b07 "- - BE352288 - - - | - - 5511;1 - -" 894060g06 - - BE352336 - - - | - - - - - 894061e07 "- - BE452139 - - - | - - 5029;1 - -" 894062e12 "- - BE452258 - - udp-glucose 6-dehydrogenase | - - 1568;1 - -" 894062d10 - - BE452233 - - similar to mammalian dipeptidyl peptidase 7 | - - - 20021010.9480.2_go blastx SPTR:Q9UHL4 symbol:DPP2_HUMAN Dipeptidyl-[GO:0008236 serine-type peptidase activity evidence=TAS] SPTR:Q9UHL4 symbol:DPP2_HUMAN Dipeptidyl-peptidase II pre 894063d10 "- Unknown, has starch binding domain of glycoside hydrolase BE452396 - Unknown, has starch binding domain of glycoside hydrolase - | - 3295 7947;1 - -" 894025d11 "- - BE211974 - - probably thioredoxin peroxidase (peroxiredoxin); 93% match to (aj304857) and (af312025) | - - - - -" 894026c08 "- - BE211806 - - - | - - 4375;1 - -" 894026d09 "- - BE211825 - - - | - - 4227;2 - -" 894026a07 "- - BE211776 - - - | - - 2014;1 - -" 894026g03 "- - BE211870 - - sf2/asf-like splicing factor | - - 3621;2 - -" 894026d10 "- Plastidic ATP/ADP transporter BE211827 - Plastidic ATP/ADP transporter no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - 4026 4432;1 - -" 894027a02 "- - BE212007 - - - | - - 6054;2 - -" 894027h04 "- - BE212133 - - - | - - 2701;1 - -" 894027b04 "RPL9 RPL9 BE212030 - RPL9 60s ribosomal protein l9 | - 2452 5318;3 20021010.2452.1_go blastx [GO:0003723 RNA binding activity evidence=TAS] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0006412 protein biosynthesis evidence=TAS] [GO:0005840 ribosome evidence=TAS] SPTR:P32969 symbol:RL9_HUMAN 60S ribosomal protein L9 60S ribosomal protein L9 58.1 634 186 6.0e-55 535 [CH on 20030713 @ 125]" 894027b01 "- - BE212024 - - - | - - 444;1 - -" 894028a06 "- - BE212154 - - similar to mammalian aldose reductase | - - 6580;2 20021010.410.1_go blastx [GO:0004032 aldehyde reductase activity evidence=TAS] [GO:0005489 electron transporter activity evidence=TAS] [GO:0005975 carbohydrate metabolism evidence=" 894028b06 "- - BE212175 - - similar to a putative arabidopsis protein (nc_003074) | - - 3220;1 - -" 894029b06 "- - BE212315 - - - | - - 1940;1 - -" 894029e11 "- - BE212372 - - - | - - 1463;2 - -" 894029f05 - - BE212381 - - - | - - - - - 894029c08 "- Similar to PGLS (6-phosphogluconolactonase) BE212334 - Similar to PGLS (6-phosphogluconolactonase) - | - 6695 6152;2 Putative 6-phosphogluconolactonase-like protein [Arabidopsis] {1e-06, part of the gene} [AG/ZD on 20030501 @ 9209]" 894030a08 "- - - - - - | - - 5526;1 - -" 894031e11 - - BE227411 - - - | - - - - - 894032g12 "TUA2 a tubulin 2 BE227503 - a tubulin 2 alpha tubulin, but not a perfect match for either alpha-1 or alpha-2; 94% identity to alpha-2 (m11448) | - 7345 7061;1 20021010.7345.2_go blastx SPTR:Q13748 symbol:TBA2_HUMAN Tubulin alpha-[GO:0005525 GTP binding activity evidence=NAS] [GO:0005874 microtubule evidence=NAS] [GO:0007017 microtubule-based process evidence=NAS] SPTR:Q13748 symbol:TBA2_HUMAN Tubulin alpha-2 chain 85.3 742 143 8.0e-71 673 [CH on 20030713 @ 138]" 894033f10 "ATS1 ATP sulfurylase BE227610 - ATP sulfurylase atp sulfurylase ats1; confirmed, matches (u57088) | - none - ATP sulfurylase [AG/ZD on 20030501 @ 9127]" 894033c05 "- Unknown BE227552 - Unknown - | - 5310 5649;1 - -" 894033f05 "- - BE227603 - - similar to an arabidopsis protein (nc_003074) | - - 3567;1 - -" 894033a10 "- - BE227527 - - - | - - 2610;2 - -" 894033b11 "- - BE227543 - - chloroplast ribosomal protein s16 | - - 8185;1 - -" 894036c07 - - BE227937 - - similar to an unidentified arabidopsis protein (nc_003076) | - - - - - 894036b09 "- - BE227920 - - - | - - 6625;1 - -" 894037g11 "- AAA-type ATPase, possibly mitochondrial BE237745 - AAA-type ATPase, possibly mitochondrial resembles yeast bcs1 | - 8546 3797;4 - -" 894037f04 "AMI1 possible acetamidase BE237705 C_810041 - similar to human cgi-108 protein | - - 5490;2 - -" 894037c02 "- - BE237663 - - possibly chloroplast ribosomal protein s13 | - - 2940;2 - -" 894037e04 "- - BE237688 - - casein kinase ii | - - 8183;2 20021010.2382.1_go blastx [GO:0004680 casein kinase activity evidence=IDA] [GO:0004682 protein kinase CK2 activity evidence=IDA] [GO:0005634 nucleus evidence=IDA] [GO:0005829 cytosol evidence=IDA] [G" 894037a04 "- - BE237633 - - - | - - 5005;2 - -" 894038h07 "- - BE237902 - - - | - - 1186;1 - -" 894038a11 "- - BE237762 - - mtn3 protein | - - 3497;1 - -" 894038c08 "- - BE237798 - - - | - - 8624;1 - -" 894038d01 "- - BE237806 - - similar to human cgi-108 protein | - - 7820;1 - -" 894038f07 "- - BE237862 - - - | - - 6032;1 - -" 894039g10 "- - BE238041 - - cytosolic glucose-6-phosphate isomerase | - - 3788;2 - -" 894039e09 "- - BE238006 - - - | - - 1336;2 - -" 894039g09 "- GROES-like protein BE238039 - GROES-like protein similar to a bacterial heat shock protein | - 1845 7347;1 - -" 894039b05 "- Unknown, possible dioxygenase BE237934 - Unknown, possible dioxygenase possible dioxygenase | - none 1993;1 - -" 894039d12 "- - BE237992 - - - | - - 5099;1 - -" 894039f11 "- - BE238023 - - elongation factor ef-p | - - 3577;1 - -" 894040f03 "PGK phosphoglycerate kinase BE238167 - phosphoglycerate kinase phosphoglycerate kinase (u14912) | - 9404 4154;1 20021010.9404.1_go blastx [GO:0004618 phosphoglycerate kinase activity evidence=TAS] SPTR:P00558 symbol:PGK1_HUMAN Phosphoglycerate kinase 1 49.8 1840 410 1.0e-103 953 [CH on 20030713 @ 162]" 894041c09 "- - BE238263 - - - | - - 4719;2 20021010.5802.1_go blastx SPTR:P09622 symbol:DLDH_HUMAN Dihydrolipoamide dehydrogenase,[GO:0004148 dihydrolipoamide dehydrogenase activity evidence=TAS] [GO:0006091 energy pathways evidence=NR] [GO:0005739 mitochondr" 894041h08 - - BE238334 - - - | - - - - - 894041e02 "- - BE238284 - - atp synthase f0 delta subunit | - - 8307;1 - -" 894041h01 "PSAF Photosystem I subunit III BE238325 - Photosystem I subunit III psaf; confirmed, matches (x13495, af135791) | - 1029 3737;1 - -" 894041h06 "- - BE238331 - - cf1 atp synthase gamma subunit (atpc); confirmed, matches (m73493) | - - 8256;2 - -" 894022c03 "- - BE129279 - - glycine-rich protein | - - 3604;3 - -" 894022d08 "- - BE129311 - - - | - - 6467;1 - -" 894023b06 "- - BE129430 - - - | - - 1045;2 - -" 894023d02 "- - BE129458 - - - | - - 6373;2 - -" 894023e05 "- - BE129476 - - - | - - 1936;1 - -" 894024a08 "- Aspartic proteinase, delta subunit BE211768 - Aspartic proteinase, delta subunit aspartic proteinase delta subunit | - 6171 5313;1 20021010.6171.2_go blastx [GO:0005615 extracellular space evidence=TAS] SPTR:P18242 symbol:Ctsd cathepsin D 48.9 " 894028d01 "- - BE212200 - - possibly ferredoxin component c | - - 5803;1 - -" 894028e03 "- - BE212221 - - - | - - 1368;2 - -" 894028e02 "- Unknown BE212219 - Unknown - | - 4458 3675;2 - -" 894029g01 "- - BE212395 - - - | - - 6833;1 - -" 894031a06 - - BE227377 - - - | - - - - - 894035c06 "- - BE227797 - - intraflagellar transport particle protein ift88; confirmed, matches (af298884) | - - 7176;1 - -" 894036c04 "- Similar to RNA helicase-like protein (may be chimeric) BE227931 - Similar to RNA helicase-like protein (may be chimeric) rna helicase | - none 594;1 - -" 894036g12 - - BE228017 - - - | - - - Putative hsp40 (dnaJ) [Methanosarcina] [7e-04] [AG/ZD on 20030501 @ 9222] 894036e06 - - BE227974 - - 60s ribosomal protein l32? but some conflicting blast results | - - - - - 894037a03 "- - BE237631 - - - | - - 6594;1 - -" 894037g07 "- - BE237742 - - - | - - 6478;1 - -" 894039e03 "- - BE237996 - - - | - - 2619;2 - -" 894040e06 "- - BE238151 - - similar to an unidentified arabidopsis protein (nc_003074) | - - 7256;1 - -" 894040g11 "- - BE238204 - - - | - - 1377;1 - -" 894040c05 "- - BE238109 - - cyclin-dependent kinase cks1, regulatory subunit | - - 782;1 20021010.8591.1_go blastx SPTR:P33552 symbol:CKS2_HUMAN Cyclin-[GO:0000079 regulation of CDK activity evidence=TAS] [GO:0008283 cell proliferation evidence=TAS] SPTR:P3355" 894041b04 "- - BE238248 - - - | - - 1910;2 - -" 894041b09 "- - BE238253 - - - | - - 5765;1 - -" 894035a01 "- - BE227749 - - putative serine/threonine kinase | - - 2266;1 - -" 894035d06 "PSBP3 similar to OEE2 BE227818 C_490070 similar to OEE2 y read has about 70% nucleotide identity to (ab035141) mitogen-activated protein kinase; x read has no match | - 3944 5776;2 20021010.2796.1_go blastx SPTR:Q9WVS8 symbol:MK07_MOUSE Mitogen-[GO:0045765 regulation of angiogenesis evidence=IMP] SPTR:Q9WVS8 symbol:MK07_MOUSE Mitogen-activated protein kinase 7 53.6 1956 338 1.0e-101 943 [CH on 20030713 @ 144]" 894035b11 "- - BE227785 - - - | - - 2463;1 - -" 894035c10 "- - BE227805 - - - | - - 4440;1 - -" 894035b02 "- - BE227768 - - - | - - 5908;1 - -" 894036e03 "- - BE227968 - - probably omega 6 desaturase (ab007640) but could be a chimeric clone; y read is perfect match for this gene, but x read does not bring up any significant similarity | - - - - -" 894037e10 "- - BE237699 - - - | - - 3485;1 - -" 894037g03 "- - BE237737 - - similar to rice submergence induced protein 2a | - - 5974;1 - -" 894037g08 "ALS acetolactate synthase BE237743 - acetolactate synthase acetolactate synthase; confirmed, matches (af022816) (af047459) | - 8636 2889;1 - -" 894037d07 - - BE237681 - - - | - - - - - 894037f02 "- - BE237703 - - threonine synthase | - - 1539;1 - -" 894037a07 "- - BE237637 - - aconitate hydratase | - - 7615;1 20021010.6157.2_go blastx SPTR:Q99798 symbol:ACON_HUMAN Aconitate hydratase,[GO:0003994 aconitate hydratase activity evidence=NR] [GO:0005506 iron ion binding activity evidence=TAS] [GO:0006091 ener" 894038f12 "- - BE237870 - - - | - - 3919;1 - -" 894038b10 "- - BE237783 - - - | - - 5653;1 - -" 894038d10 "- - BE237823 - - pyrophosphate--fructose-6-phosphate 1-phosphotransferase | - - 3121;1 - -" 894038e08 "- - BE237841 - - - | - - 7759;1 - -" 894038f01 "- - BE237850 - - similar to an unidentified arabidopsis protein | - - 7839;2 - -" 894039b07 "RPL23 RPL23 BE237938 - RPL23 blastn matches two kazusa clones, but no match to volvocales genes | - 2305 7769;1 20021010.2305.1_go blastx SPTR:P04456 symbol:RPL25 ribosomal protein L25 (rpl6L) (YL25)[GO:0006412 protein biosynthesis evidence=TAS] [GO:0000027 ribosomal large subunit assembly and maintenance evidence=IMP] [GO:0003723 RNA binding activity evidence=IDA] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0005842 cytosolic large ribosomal subunit (sensu Eukarya) evidence=TAS] SPTR:P04456 symbol:RPL25 ribosomal protein L25 (rpl6L) (YL25) 57.0 553 114 3.0e-31 330 [CH on 20030713 @ 152]" 894040e07 "- - BE238153 - - very similar but not quite perfect match of x read for dynein 1-alpha heavy chain (dhc1) (aj243806); y read doesn't match | - - 703;2 - -" 894040b10 "- - BE238098 - - - | - - 380;2 - -" 894040g03 - - BE238188 - - - | - - - - - 894040g08 "- - BE238198 - - - | - - 1335;1 - -" 894040f10 "- - BE238180 - - possibly phosphoglycerate kinase | - - 5247;2 - -" 894040f11 "- - - - - - | - - 3768;1 - -" 894019g08 "- Adenylosuccinate synthetase (AMP biosynthesis) BE122408 - Adenylosuccinate synthetase (AMP biosynthesis) adenylosuccinate synthetase | - 4767 3457;3 20021010.4767.1_go blastx [GO:0006163 purine nucleotide metabolism evidence=ISS] SPTR:Q02787 symbol:A" 894020d01 "- - BE129127 - - similar to drosophila nmda1 | - - 3757;2 - -" 894020h11 "- - BE129007 - - similar to an arabidopsis protein glycolate oxidase | - - 7076;3 - -" 894021h12 "- - BE129242 - - some similarity to a hypothetical bacterial protein, maybe a membrane protein (nc_002695) | - - 1339;1 20021010.8387.2_go blastx [GO:0005554 molecular_function unknown evidence=ND] SPTR:Q8ZD26 symbol:Q8ZD26 Putative membrane protein " 894022h12 "PRK phosphoribulokinase BE129397 - phosphoribulokinase y read is a perfect match for phosphoribulokinase (m36123) but x read doesn't bring up a good match | - 2613 6986;1 - -" 894022a05 "- - BE129246 - - similar to an unidentified human protein; some similarity in preliminary blast groupings to a dynein heavy chain | - - 1645;1 - -" 894024d07 "COX2A Cytochrome oxidase subunit IIa, N terminus BE211901 C_110207 Cytochrome oxidase subunit IIa, N terminus cytochrome c oxidase subunit ii cox2a; confirmed, matches (af305080) (af443624) | - 8491 2934;1 - -" 894024f12 "- - BE211925 - - similar to an unidentified arabidopsis protein (ay054520) | - - 5650;1 - -" 894026g04 - - BE211872 - - similar to a yeast wd repeat-containing protein | - - - 20021010.8535.2_go blastx [GO:0008372 cellular_component unknown evidence=ND] [GO:0005554 molecular_function unknown evidence=ND] [GO:0006511 ubiquitin-dependent protein catabo 894026e06 "- - BE211837 - - - | - - 7232;1 - -" 894026f10 "- - BE211864 - - similar to yeast protein ydl001wp | - - 4862;1 - -" 894027e02 "- - BE212074 - - delta-aminolevulinic acid dehydratase; 93-96% match to (u19876) | - - 1844;1 - -" 894031f03 - - BE227413 - - - | - - - - - 894031g09 "- - BE227425 - - - | - - 3531;1 - -" 894032d02 - - BE227471 - - - | - - - - - 894032f10 - - BE227486 - - phosphoribosyl-amp cyclohydrolase | - - - - - 894034g07 - - BE227734 - - - | - - - - - 894037h05 "TAL1 transaldolase BE237720 - transaldolase somewhat similar to a bacterial transaldolase | - 4431 1945;1 20021010.4431.1_go blastx SPTR:P15019 symbol:TAL1 transaldolase,[GO:0004801 transaldolase activity evidence=TAS] [GO:0006098 pentose-phosphate shunt evidence=TAS;IMP] [GO:0005737 cytoplasm evidence=ISS] SPTR:P15019 symbol:TAL1 transaldolase, enzyme in the pentose phosphate pathway 49.7 1943 320 2.0e-77 735 [CH on 20030713 @ 149]" 894038c04 "- - BE237794 - - similar to an unidentified protein from arabidopsis (ay050914) | - - 4825;1 - -" 894038a10 - - - - - - | - - - - - 894039c01 "- - BE237950 - - - | - - 5348;1 - -" 894039e06 "- - BE238002 - - similar to an unidentified arabidopsis protein (nc_003074); also a cyanobacterial homolog | - - 6500;2 - -" 894039c09 "- Unknown BE237964 - Unknown - | - 3645 6762;1 - -" 894044e11 "ASNS asparagine synthase. BE337211 - asparagine synthase. asparagine synthetase | - 7939 5040;1 20021010.7939.1_go blastx SPTR:P78753 symbol:SPBC119.10 SPBC119.[GO:0006520 amino acid metabolism evidence=ISS] [GO:0006519 amino acid and derivative metabolism evidence=ISS] [GO:0006531 aspartate metabolism evidence=ISS] SPTR:P78753 symbol:SPBC119.10 SPBC119.10 50.5 2575 572 1.0e-154 1400 [CH on 20030713 @ 169]" 894047a02 "- - BE337573 - - conflicting blast results: iaa-amino acid hydrolase, or a calmodulin-related protein | - - 2000;2 - -" 894047b06 "- - BE337599 - - - | - - 2448;1 - -" 894049f02 "- - BE351655 - - cytochrome c oxidase subunit iii cox3; 93% nucleotide identity to (af286058) | - - - - -" 894049e03 - Unknown - - Unknown - | - none - - - 894049c04 "- - BE351633 - - possibly a dehydrogenase | - - 6436;1 - -" 894052e03 "- - BE351853 - - - | - - 6369;2 - -" 894052c02 "- Unknown BE351834 - Unknown - | - 7462 2148;1 - -" 894053f07 "- - BE351940 - - similar to leishmania hypothetical protein l1648.02 | - - 47;1 - -" 894053g02 "- - BE351947 - - - | - - 7645;1 - -" 894053c02 "- - BE351905 - - - | - - 5664;1 - -" 894053g08 "- Unknown BE351953 - Unknown - | - 6613 3173;1 - -" 894055d04 "- - BE352070 - - 26s proteasome regulatory complex subunit | - - 5136;1 - -" 894056b09 "- - BE352130 - - - | - - 4212;1 - -" 894056d09 - Unknown - - Unknown - | - none - - - 894057c09 "- - BE352202 - - - | - - 4694;1 - -" 894058h09 - - - - - - | - - - - - 894058f12 - - BE352273 - - blastx suggests cytochrome c oxidase subunit 2, but no significant match to nucleotide sequence of any known chlamy gene | - - - - - 894063h02 "- - BE452578 - - - | - - 6934;1 - -" 894064c11 - - BE452654 - - - | - - - - - 894064h03 - - BE452503 - - - | - - - - - 894064h07 "- - BE452511 - - - | - - 470;1 - -" 894064a12 "- - BE452613 - - similar to arabidopsis f28p10.120 | - - 8081;1 - -" 894064a04 "- - BE452603 - - - | - - 7426;1 - -" 894026f12 "- - - - - - | - - 4024;1 - -" 894026e09 "- - - - - - | - - 6452;1 - -" 894027g04 "- - BE212115 - - n-acetylornithine deacetylase | - - 4811;1 - -" 894027f12 "- protease II BE212109 - - oligopeptidase? similar to arabidopsis (ay048238) | - 7040.1 445;1 - -" 894027h01 "- - BE212129 - - - | - - 6272;1 - -" 894027a01 "- - BE212005 - - chloroplast ribosomal protein l27 | - - 6862;1 20021010.2902.1_go blastx SPTR:Q9HDV5 symbol:SPAP19A11.05C SPAP19A11.[GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0005761 mitochondri" 894028g04 "- - BE212261 - - - | - - 3450;1 - -" 894028b03 "- - BE212169 - - - | - - 3668;1 - -" 894028h12 - - BE212289 - - - | - - - - - 894028g12 "- - BE212272 - - - | - - 6666;2 - -" 894028e08 "- - BE212226 - - - | - - 6826;1 - -" 894029a09 "- - BE212304 - - - | - - 3155;1 - -" 894031e12 "- - BE227412 - - 40s ribosomal protein s2 | - - 2167;2 - -" 894031g12 "- - BE227426 - - 20s proteasome beta subunit | - - 1674;1 - -" 894032b10 "- - BE227454 - - conflicting blast results | - - 5718;2 20021010.2432.1_go blastx SPTR:Q9UBK7 symbol:RBLA_HUMAN Rab-[GO:0003928 RAB small monomeric GTPase activity evidence=TAS] SPTR:Q9UBK7 symbol:RBLA_HUMAN Rab-like protein 2A 59.8 1585 189 1.0e-57" 894032c05 "- - BE227465 - - similar to arabidopsis accession ac000104, which in turn is reported to be similar to an aldo-keto reductase | - - 3224;2 - -" 894032c07 "- - BE227467 - - gamma-tocopherol methyltransferase | - - 7837;2 Putative delta(24)-sterol C-methyltransferase [Thermosynechococcus] {6e-38} [AG/ZD on 20030501 @ 9215]" 894032c04 - - BE227463 - - conflicting blast results: blast searches on individual ests in this contig group matched plastid division protein ftsz1, but contig 20011023.1439.2 matches 60s ribosomal protein l7, and 20011023.1439.3 matches beta-ketoacyl reductase | - 894033a05 "- - BE227520 - - - | - - 1908;3 - -" 894034b04 - - BE227663 - - possibly snrnp splicing factor | - - - - - 894034c07 "- - BE227682 - - - | - - 1572;1 - -" 894034f06 - - BE227718 - - nascent polypeptide associated complex alpha chain [alpha nac-like protein] | - - - - - 894034d12 "- - BE227701 - - - | - - 668;2 - -" 894034f12 "- - - - - - | - - 1687;1 - -" 894041f01 "- - BE238297 - - fructose-6-phosphate 2-kinase | - - 4690;5 20021010.7695.3_go blastx SPTR:P32604 symbol:FBP26 fructose-2,6-[GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity evidence=IMP] [GO:0006094 gluconeogenesis evidence=TAS] [GO:0005" 894042e02 "- - BE238392 - - - | - - 64;2 - -" 894042g02 "ASSD ASSD, aspartate-semialdehyde dehydrogenase BE238419 - ASSD, aspartate-semialdehyde dehydrogenase aspartate-semialdehyde dehydrogenase | - none 1360;1 - -" 894044b07 "LHCA6 Light harvesting complex, photosystem I BE337139 - Light harvesting complex, photosystem I lhc type iii | - 5739 1214;1 - -" 894044c03 "- - BE337155 - - gtp-binding protein of some type | - - 4400;1 20021010.426.2_go blastx SPTR:Q9SGT3 symbol:Q9SGT3 T6H22.[GO:0005554 molecular_function unknown evidence=ND] SPTR:Q9SGT3 symbol:Q9SGT3 T6H22.14 protein 58.5 1719 419 1.0e-126 1154 [CH on" 894044b04 "- - BE337135 - - adp-ribosylation factor 3 | - - 289;1 - -" 894049b09 - - BE351626 - - - | - - - - - 894050a03 - - BE351682 - - aspartate aminotransferase | - - - - - 894050f05 - - BE351729 - - blastx suggested similarity to gamete lytic enzyme (ab058413), (d10542), but this was not confirmed by blastn against volvocales sequenced genes | - - - - - 894051b10 "- Unknown BE351763 - Unknown - | - none 2925;2 - -" 894051d09 "- - BE351778 - - - | - - 2646;1 - -" 894052a08 - - BE351820 - - - | - - - - - 894054a05 "- - BE351968 - - similar to human hspco34 protein | - - 6510;1 - -" 894054f11 "- - BE352016 - - - | - - 5844;1 - -" 894055e02 - - - - - - | - - - - - 894055f01 "- - BE352085 - - - | - - 1276;1 - -" 894055b08 "- - BE352054 - - - | - - 4683;1 - -" 894060g08 "- - BE352337 - - - | - - 3592;1 - -" 894061h04 "- - BE452151 - - uridylate or adenylate kinase | - - 7790;1 20021010.2275.1_go blastx SPTR:Q20140 symbol:F38B2.[GO:0005739 mitochondrion evidence=ISS] SPTR:Q20140 symbol:F38B2.4 52.4 1307 187 6.0e-47 470 [CH on 20030713 @ 175]" 894062a06 "- - - - - - | - - 786;1 - -" 894062b08 "- - BE452187 - - signal peptidase | - - 1468;1 - -" 894063c02 "- - - - - - | - - 5586;3 - -" 894063b11 "- - - - - - | - - 2251;1 - -" 894025d09 - - BE211973 - - - | - - - - - 894026d08 "- - BE211823 - - no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - - 139;2 - -" 894026f04 "- - BE211853 - - - | - - 7059;1 - -" 894026e07 - - BE211838 - - - | - - - - - 894026f01 "- - - - - - | - - 1946;1 20021010.9424.1_go blastx [GO:0006412 protein biosynthesis evidence=TAS] [GO:0003735 structural constituent of ribosome evidence=TAS] [GO:0005842 cytosolic large ribosomal subunit (sensu Eukarya) evidence=TAS] SPTR:Q02753 s" 894026g08 "RPSCL1 RPSCL1 BE211880 - RPSCL1 chloroplast ribosomal protein s22 | - 2805 3091;2 Putative chloroplast ribosomal protein S22 [Spinacia oleracea] {3e-35} [AG/ZD on 20030501 @ 9146]" 894027g12 "- - BE212127 - - methionine synthase | - - 5927;1 20021010.7076.2_go blastx SPTR:Q99707 symbol:METH_HUMAN 5-methyltetrahydrofolate--[GO:0007417 central nervous system development evidence=NR] [GO:0007399 neurogenesis evidence=TAS] SPTR:Q99707 symbol" 894027h10 "- - - - - - | - - 7287;2 - -" 894027h11 "- - BE212145 - - - | - - 3034;2 - -" 894027e05 "- - BE212080 - - rna binding motif protein | - - 3143;1 20021010.6270.1_go blastx SPTR:Q9Y5S9 symbol:RB8A_HUMAN RNA-[GO:0000004 biological_process unknown evidence=ND] [GO:0003729 mRNA binding activity evidence=NAS] [GO:0005634 nucleus evidence=NA" 894028a08 "- - BE212158 - - aaa-type atpase (arabidopsis) or vacuolar sorting protein 4 (yeast) | - - 5179;1 20021010.2383.1_go blastx [GO:0008573 peroxisome-assembly ATPase activity evidence=TAS] [GO:0006355 regulation of transcription, DNA-dependent evidence=" 894028e11 "- - BE212232 - - apparently not carbonic anhydrase cah1; no match of nucleotide sequence to any previously sequenced chlamy or other volvocales gene | - - 5024;2 20021010.2550.2_go blastx [GO:0005739 mitochondrion evidence=IDA] [GO:0006979 response to" 894029e03 "- - BE212358 - - - | - - 5452;1 - -" 894029f01 "- Unknown BE212376 - Unknown - | - 709 3417;1 - -" 894029f09 - - BE212387 - - - | - - - - - 894029d02 - - BE212342 - - ornithine decarboxylase | - - - 20021010.6557.1_go blastx [GO:0015940 pantothenate biosynthesis evidence=IMP] [GO:0004586 ornithine decarboxylase activity evidence=IDA] [GO:0008372 cellular_component unknown evidence=ND] SPTR:P0843 894031c03 "- - BE227391 - - actophorin | - - 2168;1 - -" 894031d01 "- - BE227396 - - possibly 40s ribosomal protein s6 | - - 2702;1 - -" 894032h06 "- - BE227511 - - similar to arabidopsis al163815 | - - 3928;2 - -" 894033a11 "- - BE227528 - - - | - - 5765;1 - -" 894033e07 "- - BE227592 - - - | - - 2657;1 - -" 894033h10 - - BE227643 - - - | - - - - - 894033h06 "LHCA3 Light harvesting complex, photosystem I BE227637 - Light harvesting complex, photosystem I lhc; probably lhca5 | - 4209 8279;1 - -" 894033h09 "- - BE227641 - - - | - - 6480;1 - -" 894052e02 "- - BE351852 - - - | - - 1630;2 - -" 894052g07 "- - BE351872 - - maybe (aj344366) striated fiber assemblin based on blastx, but no nucleotide sequence match to this chlamy gene | - - 6434;1 - -" 894052h05 - - BE351880 - - - | - - - - - 894052h11 "- - BE351885 - - - | - - 4969;1 - -" 894052d09 - - - - - - | - - - - - 894053g12 "- - - - - - | - - 4675;4 - -" 894054g02 "- - BE352018 - - - | - - 1695;2 - -" 894054c09 "- - BE351986 - - nascent polypeptide associated complex alpha chain | - - 5592;1 - -" 894054d06 - - BE351990 - - possibly myo-inositol-1-phosphate synthase | - - - - - 894054a07 "- - BE351969 - - rsembles gamm1 protein from arabidopsis | - - 3457;4 - -" 894054c06 - - BE351985 - - - | - - - - - 894054e02 "- Unknown, some similarity to nucleoredoxin BE351998 - Unknown, some similarity to nucleoredoxin - | - none 3105;1 - -" 894055g11 "- - BE352104 - - possibly a protein kinase | - - 7952;1 - -" 894055h10 - - BE352114 - - - | - - - - - 894055a05 "- - BE352041 - - - | - - 6576;1 - -" 894056c09 "- - BE352140 - - nadh dehydrogenase 24 kda subunit | - - 3653;1 - -" 894056g07 "- - BE352173 - - ida4 dynein inner arm p28 light chain; confirmed, matches (z48059) | - - - - -" 894082c09 "- - BE725311 - - - | - - 3607;2 - -" 894066h09 "RPL35 RPL35 BE452950 - RPL35 - | - 6057 1874;1 - -" 894066a10 "- - BE452822 - - - | - - 1789;2 - -" 894068c02 "- - BE453076 - - possibly nitrilase 1 | - - 7321;1 20021010.6251.1_go blastx [GO:0000257 nitrilase activity evidence=TAS] [GO:0005554 molecular_function unknown evidence=ND] SPTR:O76091 symbol:O76091 Nitrilase homolog 1 Nitrilase homolog 1 51.5 674" 894068c01 "- Putative prolyl 4-hydroxylase, a subunit BE453074 - Putative prolyl 4-hydroxylase, a subunit prolyl 4-hydroxylase, alpha subunit; similar to arabidopsis ac011623 | - 4654 4479;1 Putative prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis]**" 894068f03 "- - BE453130 - - - | - - 6154;2 - -" 894069f03 - - BE453286 - - - | - - - - - 894071e05 "CLPR2 clp protease inactive subunit of chloroplast ClpP complex BE453556 C_560017 - similar to a cyanobacterial atp-dependent clp protease | - - 830;1 - -" 894072d06 - - - - - - | - - - - - 894072a03 PSB28 Ycf79, also called PsbW-like - C_150156 Ycf79, also called PsbW-like - | - 2051 - - - 894073d03 - - BE724270 - - - | - - - - - 894073e05 "- - BE724281 - - possibly alpha 1 subunit of 20s proteasome | - - 7051;1 - -" 894074c08 "- - BE724331 - - rubredoxin | - - 4938;1 - -" 894077b08 "- - BE724564 - - 2-oxoglutarate/malate translocator | - - 2252;2 - -" 894077h12 "- Unknown, with rubredoxin-type iron-Cys cluster BE724672 - Unknown, with rubredoxin-type iron-Cys cluster similar to arabidopsis mkp11.2 | - 2141 8481;1 Putative expressed protein [At5g17170.1, Arabidopsis, 5e-44] {rubredoxin [Alcanivorax,7e-04]} [" 894078h07 "- - BE724819 - - - | - - 8142;1 - -" 894079h04 - - BE724938 - - - | - - - - - 894079g02 "- - BE724920 - - - | - - 8514;1 - -" 894079f05 "- - BE724911 - - - | - - 7858;1 - -" 894081c12 - - BE725151 - - 60s ribosomal protein l28 | - - - - - 894081g12 "FSD1 iron superoxide dismutase in chloroplast BE725229 - iron superoxide dismutase in chloroplast superoxide dismutase (fe); confirmed, matches (u22416) | - 3424 1374;2 - -" 894082c02 "- - BE725283 - - conflicting blast results: 40s ribosomal protein s10 or omega-3 fatty acid desaturase | - - 610;1 - -" 894082e07 "- Putative transketolase BE725344 - Putative transketolase transketolase | - 6137 4676;2 20021010.6137.2_go blastx [GO:0006098 pentose-phosphate shunt evidence=TAS;IMP] [GO:0005737 cytoplasm evidence=ISS] [GO:0004802 transketolase activity evidence" 894082a06 "- - BE725257 - - conflicting blastx results; no match of nucleotide sequence to previously sequenced volvocales accessions | - - 6309;1 - -" 894041d11 "LHCA5 Light harvesting complex, photosystem I BE238278 - Light harvesting complex, photosystem I lhc | - 7340 3227;1 - -" 894041g03 "- - BE238313 - - - | - - 7792;1 - -" 894041c10 "- - BE238264 - - - | - - 8157;1 - -" 894042b01 "- - BE238352 - - nadh glutamate dehydrogenase | - - 7540;1 - -" 894042c08 "- Unknown BE238373 - Unknown - | - 763 4465;1 - -" 894042g09 "- - BE238428 - - - | - - 7372;2 - -" 894044f09 "AOX1 mitochondrial alternative oxidase BE337230 - mitochondrial alternative oxidase alternative oxidase 1; confirmed, matches (af314254) | - 8476 1509;1 - -" 894044e06 "- - BE337201 - - - | - - 778;1 - -" 894044a11 "- - BE337127 - - esterase d | - - 1156;1 20021010.2743.1_go blastx [GO:0004759 serine esterase activity evidence=NAS] [GO:0000004 biological_process unknown evidence=ND] [GO:0016023 cytoplasmic vesicle evidence=NAS] [GO:0004091 carboxylesterase ac" 894044f01 "- - BE337215 - - blast searches on individual ests in this group suggest 5-adenylylsulfate reductase (paps reductase); however, contig 20011023.1574.1 matches the gar1 small nucleolar rnp | - - 612;2 - -" 894044f05 "- - BE337223 - - superoxide dismutase (mn); confirmed, matches (u24500) sod1 | - - 6115;1 - -" 894044b05 - Unknown, hydroxyproline rich protein glycoprotein BE337137 - Unknown, hydroxyproline rich protein glycoprotein blastx suggested proton-translocating inorganic pyrophosphatase, but nucleotide sequence does not match this gene as previously sequenced fr 894044g10 "- - BE337254 - - possibly threonyl-trna synthetase | - - 7606;1 - -" 894047d07 "- - BE337632 - - - | - - 5796;2 - -" 894047a06 "- - BE337579 - - - | - - 3334;1 - -" 894047f10 "- - BE337678 - - similar to cyanobacterial blue-copper-protein | - - 3611;1 - -" 894047a09 - - BE337585 - - rna polymerase ii subunit | - - - - - 894047d05 "- - BE337628 - - - | - - 6559;1 - -" 894050d09 "- - BE351718 - - similar to arabidopsis mxc17.8 | - - 96;2 - -" 894050c03 - - BE351702 - - - | - - - - - 894050b12 - - BE351699 - - - | - - - - - 894050d04 "- - BE351714 - - - | - - 4792;2 - -" 894050g03 - - BE351736 - - - | - - - - - 894050h12 - - BE351751 - - - | - - - - - 894057d06 "- - BE352209 - - nadph:protochlorophyllide oxidoreductase; confirmed, matches (u36752) | - - 6763;1 - -" 894057b04 "- - BE352192 - - - | - - 5323;3 - -" 894057b08 - - BE352195 - - - | - - - - - 894057c11 "- - BE352203 - - - | - - 7698;1 - -" 894057d10 - - BE352211 - - - | - - - - - 894057f07 "- - BE352229 - - serine carboxypeptidase i | - - 2419;2 - -" 894059f11 - - BE352317 - - possibly dihydrolipoamide s-acetyltransferase | - - - - - 894059h09 "- - BE352325 - - no sequence identity to any previously sequenced volvocales gene | - - 5443;3 - -" 894059a11 - - BE352285 - - - | - - - - - 894059d03 - - BE352298 - - - | - - - - - 894060g11 "- - BE352338 - - gsh-dependent dehydroascorbate reductase 1 | - - 3342;2 - -" 894061h02 "- - BE452150 - - - | - - 4524;3 - -" 894062d08 "- Unknown BE452229 - Unknown - | - 7233 1860;1 - -" 894062a07 "PDX1 pyridoxin biosynthesis protein ? I FIND a ""Sor-like protein"" AAK18310 BE452163 - pyridoxin biosynthesis protein ? I FIND a ""Sor-like protein"" AAK18310 similar to a bacterial and plant ethylene-inducible protein; ginkgo sor-like protein | - 8645 5164;1 20021010.8645.1_go blastx SPTR:Q9M032 symbol:Q9M032 Pyridoxine biosynthesis protein-[GO:0005554 molecular_function unknown evidence=ND] SPTR:Q9M032 symbol:Q9M032 Pyridoxine biosynthesis protein-like 69.4 1815 294 1.0e-110 1017 [CH on 20030713 @ 176]" 894062c07 "- - BE452207 - - resembles tomato nonclathrin coat protein zeta2-cop | - - 184;1 20021010.7932.3_go blastx SPTR:Q9P299 symbol:COZ2_HUMAN Coatomer zeta-[GO:0005554 molecular_function unknown evidence=ND] [GO:0006886 intracellular protein transport ev" 894062d07 "- - BE452227 - - possibly glyoxal oxidase (glx1) | - - 6786;2 - -" 894062h08 "- - BE452311 - - manganese transport protein | - - 3523;1 - -" 894063b07 "- Plasma membrane proton ATPase BE452353 - Plasma membrane proton ATPase plasma membrane hydrogen atpase; confirmed, matches (aj300672) | - 3927 814;1 - -" 894063c09 "- - BE452373 - - similar to an unidentified arabidopsis protein (nc_003071) | - - 6964;1 - -" 894063f02 "- - BE452421 - - hypothetical protein 16 from toc transposon; perfect match over most but not all of its length to (x56231) | - - 4499;1 - -" 894063g09 "- - BE452568 - - conflicting blast results | - - 7453;1 - -" 894064c06 "- - BE452644 - - blastx suggested cox2, but nucleotide sequence doesn't match any known volvocales gene | - - 2156;1 - -" 894064e03 "- - BE452442 - - - | - - 7661;4 - -" 894064a07 "- - - - - - | - - 6495;1 - -" 894042a12 "- - BE238351 - - - | - - 4802;2 - -" 894042d03 - - BE238381 - - - | - - - - - 894042e09 "- - BE238400 - - nucleosome assembly protein i | - - 855;1 - -" 894042f08 "- - BE238413 - - biotin carboxyl carrier protein isoform 2 | - - 376;1 - -" 894042g10 "- - BE238429 - - calcium-dependent protein kinase | - - 675;1 - -" 894042h08 - - BE238438 - - biotin carboxyl carrier protein isoform 2 | - - - - - 894044d01 "- - BE337172 - - - | - - 4533;1 - -" 894044e12 "APR 5'-adenylylsulfate reductase BE337213 C_160202 5'-adenylylsulfate reductase 5-adenylylsulfate reductase (paps reductase) | - 9443 5891;2 - -" 894044b03 - - BE337133 - - - | - - - - - 894044d03 - - BE337176 - - - | - - - - - 894044e09 "- Unknown BE337207 - Unknown - | - 6714 7349;1 - -" 894044h01 "ALB3.1 required for LHC integration BE337259 - required for LHC integration ppf-1 protein or chloroplast membrane protein | - 2747 7279;3 - -" 894047g12 - - BE337698 - - resembles yeast ubiquitin-protein ligase | - - - - - 894047h09 "- - BE337707 - - - | - - 294;1 - -" 894049d09 "- - BE351646 - - - | - - 2386;3 - -" 894049h01 "- - BE351671 - - - | - - 5377;1 - -" 894049g09 - - - - - - | - - - - - 894050b03 "- - BE351691 - - - | - - 7086;2 - -" 894050b09 - - BE351696 - - similar to arabidopsis ac051629 | - - - - - 894050e10 - - BE351723 - - no significant blastn match to chlamy or other volvocales | - - - - - 894051e02 "- - BE351782 - - hydroxyproline-rich glycoprotein | - - 4835;1 - -" 894051e11 LCI3 low-CO2 induced, unknown function BE351789 C_3580001 low-CO2 induced, unknown function has about 70% nucleotide sequence identity to (af015661) encoding low co2 inducible protein lci3 | - 4352 - - - 894051h01 - - BE351805 - - - | - - - - - 894051c09 "- - BE351770 - - - | - - 8387;1 - -" 894057g07 "- - BE352237 - - - | - - 4379;1 - -" 894058c11 - - - - - - | - - - - - 894058f11 "- Unknown BE352272 - Unknown possible glycine-rich rna-binding protein | - none 6047;2 Putative Glycine-rich RNA-binding protein [Arabidopsis]* {need more info} [AG/ZD on 20030501 @ 9153]" 894058d03 - - BE352259 - - possibly pterin-4a-carbinolamine dehydratase | - - - - - 894058e03 "- - BE352263 - - - | - - 6633;1 - -" 894059c11 "- - BE352297 - - some similiarity to ycf37 | - - 6928;1 - -" 894061g03 "- - - - - - | - - 1232;2 - -" 894061e10 "- - BE452141 - - signal recognition particle 54 kda subunit | - - 2437;3 - -" 894062g06 "- - - - - - | - - 1359;2 20021010.7697.2_go blastx SPTR:P53597 symbol:SUCA_HUMAN Succinyl-[GDP-forming] alpha-chain, mitochondrial precursor [GO:0005739 mitochondrion evidence=TAS] SPTR:P53597 symbol:SUCA_HUMAN Succinyl-CoA ligase 63.7 986 179 1.0e-" 894062e01 "CPN6B beta subunit of Rubisco binding-protein, GroEL BE452239 C_420098/9 beta subunit of Rubisco binding-protein, GroEL cpn60 chaperonin 60 beta-1 chain; confirmed, matches (l27471) | - 5669 5218;1 20021010.5669.2_go blastx SPTR:P10809 symbol:CH60_HUMAN 60 kDa heat shock protein,[GO:0003773 heat shock protein activity evidence=NAS] [GO:0005524 ATP binding activity evidence=NAS] [GO:0006457 protein folding evidence=NAS] [GO:0030150 mitochondrial matrix protein import evidence=NAS] [GO:0005759 mitochondrial matrix evidence=NAS] SPTR:P10809 symbol:CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor 47.3 1621 241 2.0e-52 518 [CH on 20030713 @ 180]" 894062d05 "- - BE452223 - - beta 3 subunit of 20s proteasome | - - 4730;1 20021010.6503.1_go blastx SPTR:Q9Y7T8 symbol:SPCC63.12C SPCC63.[GO:0006508 proteolysis and peptidolysis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0005829 cytosol e" 894062f02 "- - BE452261 - - - | - - 8472;2 - -" 894063g11 "- Unknown BE452572 - Unknown similar to an unidentified arabidopsis protein (nc_003074) | - 8351 6293;1 - -" 894063a12 "- - BE452339 - - small zinc finger-like protein, similar to arabidopsis tim9 | - - 5604;1 20021010.2404.1_go blastx [GO:0005758 mitochondrial intermembrane space evidence=IDA] [GO:0006628 mitochondrial translocation evidence=IGI;ISS;IPI] [GO:0008565 " 894063f07 - - BE452543 - - - | - - - - - 894063e11 "- - BE452416 - - alcohol dehydrogenase, class iii | - - 1769;1 - -" 894063c10 "- - BE452375 - - probable mitochondrial uncoupling protein | - - 712;1 - -" 894063a09 "- - BE452334 - - - | - - 3172;1 - -" 894064e10 "RBS19 RBS19 BE452455 - RBS19 40s ribosomal protein s19 | - 5820 1113;1 20021010.5820.1_go blastx [GO:0006412 protein biosynthesis evidence=ISS] [GO:0019538 protein metabolism evidence=ISS] [GO:0016283 eukaryotic 48S initiation complex evidence=ISS] [GO:0005829 cytosol evidence=ISS] [GO:0016282 eukaryotic 43S pre-initiation complex evidence=ISS] [GO:0005737 cytoplasm evidence=ISS] [GO:0005830 cytosolic ribosome (sensu Eukarya) evidence=ISS] SPTR:P79016 symbol:RPS1902 RPS1902 52.3 959 132 3.0e-35 368 [CH on 20030713 @ 189]" 894064b07 "- - BE452624 - - photosystem ii stability/assembly factor hcf136 | - - 4996;1 - -" 894064a06 "- - BE452606 - - chloroplast ribosomal protein s14; confirmed, matches (x53977). this is a chloroplast gene. | - - 4746;1 - -" 894065d08 "- - BE452719 - - - | - - 2857;5 - -" 894065h05 - - BE452793 - - possibly abc transporter | - - - - - 894065a07 "PSAG Photosystem I subunit G BE452532 - Photosystem I subunit G psag; confirmed, matches (x15165, be725648) | - none 4823;1 - -" 894056f06 "- - BE352163 - - - | - - 7746;1 - -" 894056h08 - - BE352183 - - - | - - - - - 894056c03 "- - BE352135 - - peptidyl-prolyl cis/trans isomerase | - - 8045;1 - -" 894057h01 - - - - - - | - - - - - 894057e09 "- - BE352220 - - - | - - 6685;1 - -" 894057b07 "- - BE352194 - - possibly 40s ribosomal protein s4, but doesn't match any known chlamy gene nucleotide sequence | - - 6483;1 - -" 894056h09 - - BE352184 - - betaine-aldehyde dehydrogenase | - - - - - 894065c12 "- - BE452705 - - probable hydroxyproline-rich glycoprotein | - - 5746;1 - -" 894065f09 "- - BE452761 - - phd-type zinc finger protein | - - 8385;1 - -" 894065c04 "- - BE452692 - - - | - - 450;1 - -" 894065d02 "- - BE452709 - - mitochondrial f1-atpase, delta subunit | - - 5094;1 - -" 894066f08 "- - BE452910 - - - | - - 4489;1 - -" 894066g10 - - BE452932 - - - | - - - - - 894069d01 "SIR1 sulfite reductase BE453250 C_810019 sulfite reductase sulfite reductase | - 9009 1751;1 20021010.9009.1_go blastx SPTR:O14167 symbol:SPAC10F6.01C SPAC10F6.[GO:0006996 organelle organization and biogenesis evidence=ISS] SPTR:O14167 symbol:SPAC10F6.01C SPAC10F6.01C 45.9 1390 135 2.0e-26 294 [CH on 20030713 @ 201]" 894069a10 "- - BE453203 - - mitochondrial adp/atp translocator; confirmed, matches (x65194) | - - 457;1 20021010.1312.4_go blastx [GO:0006810 transport evidence=ISS] [GO:0006839 mitochondrial transport evidence=ISS] [GO:0006605 protein targeting evidence=ISS]" 894070a01 "- - BE453338 - - - | - - 1180;3 - -" 894070h05 "- - BE453467 - - mitochondrial 2-oxoglutarate/malate translocator | - - 838;2 - -" 894070f11 "- - BE453444 - - - | - - 2282;2 - -" 894070d11 "- - BE453405 - - - | - - 344;1 - -" 894074f01 "- - BE724352 - - ubiquitin fusion protein; confirmed, matches (x15427) and (x60826), which encode identical proteins; gene name needs to be resolved | - - - - -" 894076h01 "- - BE724526 - - putative proteasome regulatory subunit | - - 2577;1 - -" 894076b06 "LHCA9 Light harvesting complex, photosystem I BE724418 - Light harvesting complex, photosystem I lhc | - 7340 3227;1 - -" 894076g08 "- - BE724518 - - similar to an unknown arabidopsis protein (ay050977) | - - 8312;1 - -" 894076d01 "- - BE724448 - - - | - - 107;2 - -" 894079c06 - - BE724875 - - - | - - - - - 894080a03 "- - BE724951 - - casein kinase i | - - 3018;1 20021010.9541.2_go blastx [GO:0007049 cell cycle evidence=ISS] [GO:0006281 DNA repair evidence=ISS] [GO:0016288 cytokinesis evidence=ISS] [GO:0006950 response to stress evidence=ISS] [GO:0007165 sign" 894081g03 "- Potential RNA binding protein BE725215 - Potential RNA binding protein possibly an mrna binding protein | - 8592 4125;2 - -" 894081c04 "- - BE725135 - - - | - - 2619;1 - -" 894081c08 "- - BE725143 - - similar to a bacterial gtp-binding protein | - - 2856;1 - -" 894081c06 "- - BE725139 - - - | - - 3732;3 - -" 894076h07 "- - BE724537 - - - | - - 7415;1 - -" 894051h11 - - BE351812 - - cytochrome c oxidase, subunit 6b | - - - - - 894051h04 "- - BE351808 - - similar to an unidentified arabidopsis protein (nc_003075) | - - 6796;1 - -" 894052e05 "- - BE351855 - - - | - - 6747;2 - -" 894052h07 "- - BE351881 - - ketol-acid reductoisomerase | - - 1465;1 - -" 894052d07 "- - BE351847 - - dynein outer arm beta heavy chain (oda4); confirmed, matches (u02963) | - - 3131;1 - -" 894052b06 - - BE351829 - - possibly nadh dehydrogenase subunit 4 | - - - - - 894053a01 "- - BE351886 - - - | - - 3586;1 - -" 894053b02 "- - BE351895 - - - | - - 6838;2 - -" 894053c07 "- - BE351909 - - - | - - 1710;2 - -" 894053e07 - - - - - - | - - - - - 894053a11 "- - BE351892 - - - | - - 8006;1 - -" 894053h08 "- - BE351963 - - - | - - 8516;3 - -" 894054g08 "- - BE352024 - - - | - - 4149;1 - -" 894054a11 "- Unknown BE351972 - Unknown - | - none 2811;1 - -" 894055b06 "- - BE352052 - - possibly a gtp-binding protein | - - 803;2 - -" 894055f12 "- LOX1-like lipoxygenase BE352094 - LOX1-like lipoxygenase lipoxygenase | - none 599;1 Putative lipoxygenase [Arabidopsis] {2e-06} [AG/ZD on 20030501 @ 9161]" 894055d10 "- - BE352076 - - - | - - 8204;2 - -" 894056d07 "- - BE352148 - - - | - - 7573;1 - -" 894056g12 - - BE352177 - - - | - - - - - 894056g03 "- - BE352169 - - similar to rice rrna intron-encoded homing endonuclease; some conflicting blast results, however | - - 5983;1 - -" 894056a07 - - BE352120 - - - | - - - - - 894056b10 "- - BE352131 - - possibly inositol hexaphosphate kinase | - - 6794;2 - -" 894056e06 - - BE352156 - - - | - - - - - 894055e12 - - BE352084 - - - | - - - - - 894057e11 "HCP hydroxylamine reductase. BE352222 - hydroxylamine reductase. prismane protein | - none 8271;2 Putative prismane protein [Acidithiobacillus ferrooxidans] {need more info} [AG/ZD on 20030501 @ 9164]" 894058c05 "- - BE352255 - - 40s ribosomal protein s6 | - - 1450;1 - -" 894058b03 - - BE352250 - - probable hydroxyproline-rich glycoprotein | - - - - - 894058d10 - - BE352261 - - - | - - - - - 894058a11 "- - BE352248 - - omega-3 fatty acid desaturase | - - 5651;1 - -" 894059b10 "- MPC1, mitochondrial phosphate transporter BE352289 - MPC1, mitochondrial phosphate transporter mitochondrial phosphate transporter | - none 2984;1 - -" 894061c10 "- - BE452131 - - - | - - 6607;2 - -" 894061h09 "- - BE452152 - - resembles tomato nonclathrin coat protein zeta2-cop | - - 184;1 - -" 894062g03 "- - - - - - | - - 1557;1 - -" 894062e07 "LHCB4 Light harvesting complex, photosystem II BE452250 - Light harvesting complex, photosystem II lhc, probably lhcb4; 94% sequence identity to (ab051211) | - 7231 4179;1 - -" 894062g02 "- - BE452280 - - - | - - 8352;2 20021010.9137.1_go blastx SPTR:P25153 symbol:UBC6_DROME Ubiquitin-conjugating enzyme E2-[GO:0006281 DNA repair evidence=IGI] SPTR:P25153 symbol:UBC6_DROME Ubiquitin-conjugating enzyme E2-17 kDa 76.7 1567 129 9.0e-56 5" 894062a09 "THIH thiazole biosynthesis protein BE452167 - thiazole biosynthesis protein thiamine biosynthesis enzyme, equivalent to e. coli thih | - 6078 2408;1 Putative thiamine biosynthesis enzyme [Thermotoga maritima] {e-118} [AG/ZD on 20030501 @ 9172]" 894063h12 "- - BE452595 - - 40s ribosomal protein s3 | - - 2109;1 - -" 894063b10 "- - BE452359 - - - | - - 3816;1 - -" 894063g03 "- - BE452557 - - ruv dna-helicase-like protein | - - 7028;1 20021010.4830.1_go blastx SPTR:Q9Y265 symbol:RUV1_HUMAN RuvB-[GO:0003678 DNA helicase activity evidence=TAS;IDA] [GO:0006357 regulation of transcription from Pol II promoter evidence=TAS] [" 894063a03 "- - BE452324 - - - | - - 3686;1 - -" 894063b06 "- - BE452351 - - - | - - 2866;1 20021010.4578.2_go blastx [GO:0004693 cyclin-dependent protein kinase activity evidence=TAS] [GO:0007048 oncogenesis evidence=TAS] [GO:0007089 start control point of mitotic cell cycle evidence=TAS] [GO:0008285 nega" 894064h11 "- - - - - - | - - 601;2 - -" 894064f10 "- - BE452474 - - chloroplast ribosomal protein l33 | - - 167;1 - -" 894064b01 "- - BE452615 - - conflicting blast results | - - 349;1 - -" 894065e11 "- - BE452744 - - - | - - 2210;1 - -" 894065c10 "- Unknown BE452701 - Unknown - | - 8900 3234;3 - -" 894065d10 "- - BE452723 - - - | - - 1210;2 - -" 894063h03 "- Unknown BE452580 - Unknown - | - 8725 5760;4 - -" 894042c04 - - BE238370 - - - | - - - - - 894042d05 "- - BE238383 - - no match of nucleotide sequence to any known volvocales sequence | - - 2222;1 - -" 894042f02 "- - BE238407 - - apospory-associated protein c; confirmed, matches (af195243) | - - 7936;1 - -" 894042g07 "- - BE238426 - - - | - - 8523;2 - -" 894042g04 - Putative prolyl 4-hydroxylase, a subunit - - Putative prolyl 4-hydroxylase, a subunit - | - 7452 - Putative prolyl 4-hydroxylase alpha subunit [Arabidopsis] {y, 4e-07} [AG/ZD on 20030501 @ 9167] 894042a09 "- - BE238346 - - - | - - 558;1 - -" 894044h03 - - - - - - | - - - - - 894044a12 - - BE337128 - - - | - - - - - 894044a10 "- - BE337125 - - - | - - 3510;1 - -" 894044e07 "- - BE337203 - - possible er vesicle protein | - - 3144;2 20021010.1581.2_go blastx SPTR:P39727 symbol:ERV46 ER-[GO:0005554 molecular_function unknown evidence=ND] [GO:0006888 ER to Golgi transport evidence=IPI] [GO:0030173 integral to Golgi membra" 894044g08 "- - BE337252 - - - | - - 4066;1 - -" 894044h11 "- - BE337273 - - some similarity to mammalian alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase | - - 1325;1 - -" 894047e03 "- - BE337648 - - similar to bacterial heat shock protein dnaj | - - 8420;2 20021010.6424.1_go blastx [GO:0005829 cytosol evidence=IDA] [GO:0016558 peroxisome matrix protein import evidence=IMP] [GO:0003767 co-chaperone activity evidence=IMP] SPTR:P" 894047a05 "- Unknown, similar to a bacterial membrane protein BE337577 - Unknown, similar to a bacterial membrane protein similar to a bacterial membrane protein | - 7804 8614;1 Putative membrane protein [Yersinia, 6e-23], [transcriptional regulator [Mathanosarcin" 894049g04 - - BE351663 - - - | - - - - - 894050h08 "- - BE351749 - - blastx suggested chloroplast rna polymerase sigma factor (ab049220), but no match to this or any other volvocales gene on blastn | - - 8618;1 - -" 894050g09 "- - BE351741 - - chloroplast envelope carrier p